View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_15 (Length: 361)
Name: NF3013_low_15
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 11 - 347
Target Start/End: Original strand, 51487151 - 51487487
Alignment:
| Q |
11 |
caaaggttactgattgcaaacttcctctccctttggttatgaatttgatatacttgtgtttcttgatatactgctttgctctcaaaggcgttggtagatt |
110 |
Q |
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| T |
51487151 |
caaaggttactgattgcaaacttcctctccctttggttatgaatttgatatacttgtgtttcttgatatactgctttgctctcaaaggcattggtagatt |
51487250 |
T |
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| Q |
111 |
atatctcatgtacacattcttttgtccgattctctaggctcgcgatttaaaatttgcatttattgtgcgtgtttcatgaaattgatggatgtattcaatt |
210 |
Q |
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| T |
51487251 |
atatctcatgtacacattcttttgtccgattctctaggctcgcgatttaaaatttgcatttattgtgtgtgtttcatgaaattgatggatgtattcaatt |
51487350 |
T |
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| Q |
211 |
tacaggtttggagaaaccaatgatccagtgtaaacatatgttagaaatccaactgggaatgtacannnnnnnagttagttgattaggttcggtaatttca |
310 |
Q |
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| T |
51487351 |
tacaggtttggagaaaccaatgatccagtgtaaacatatgttagaaatccaactgggaatgtacatttttttagttagttgattacgttcggtaatctca |
51487450 |
T |
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| Q |
311 |
tgttctttttagcaactgtaggaatggttccatattg |
347 |
Q |
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| T |
51487451 |
tgttctttttagcaactgtaggaatggttccatattg |
51487487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 30199224 - 30199163
Alignment:
| Q |
184 |
tcatgaaattgatggatgt-attcaatttacaggtttggagaaaccaatgatccagtgtaaa |
244 |
Q |
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| T |
30199224 |
tcatgaaattgatgtctgtcattcaatttacaggtctggagaaaccaaggttccaatgtaaa |
30199163 |
T |
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