View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_low_17 (Length: 335)

Name: NF3013_low_17
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_low_17
NF3013_low_17
[»] chr3 (19 HSPs)
chr3 (6-220)||(21088457-21088670)
chr3 (50-326)||(23465328-23465604)
chr3 (5-326)||(23474293-23474613)
chr3 (48-326)||(23406672-23406950)
chr3 (50-279)||(23353825-23354054)
chr3 (50-326)||(23449195-23449471)
chr3 (5-326)||(23441761-23442081)
chr3 (49-326)||(23455958-23456235)
chr3 (50-326)||(23480685-23480961)
chr3 (64-326)||(23435407-23435669)
chr3 (50-326)||(23500958-23501234)
chr3 (48-326)||(23388312-23388590)
chr3 (48-278)||(21087310-21087540)
chr3 (48-279)||(36025390-36025618)
chr3 (50-236)||(36004631-36004817)
chr3 (73-227)||(36017317-36017471)
chr3 (277-326)||(21086891-21086940)
chr3 (73-231)||(36034223-36034385)
chr3 (48-209)||(36009677-36009838)
[»] scaffold0201 (1 HSPs)
scaffold0201 (48-279)||(13500-13731)
[»] scaffold0570 (2 HSPs)
scaffold0570 (48-326)||(9562-9840)
scaffold0570 (56-148)||(3305-3397)
[»] chr2 (3 HSPs)
chr2 (73-231)||(16334662-16334820)
chr2 (73-231)||(16124831-16124989)
chr2 (73-231)||(16126984-16127142)
[»] chr4 (1 HSPs)
chr4 (73-241)||(12894610-12894778)
[»] scaffold0022 (1 HSPs)
scaffold0022 (91-216)||(167562-167687)
[»] chr8 (2 HSPs)
chr8 (88-130)||(11125522-11125564)
chr8 (101-138)||(6097893-6097930)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 21088457 - 21088670
Alignment:
Q  6 agtctgcttcttcatatgtaatggatctattttgtnnnnnnncaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcatt 105  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21088457 agtctgcttcttcatatgtaatggatctattttgtaaaaaa-caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcatt 21088555  T
Q  106 caaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctcct 205  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21088556 caagcaccattttgaggaagcatagttttctgaaaagataacaatagatacacgtgactcctcaatagcttcgatgaatgctggcgagatctcgtctcct 21088655  T
Q  206 tttttaagctcgttg 220  Q
    |||||||||||||||    
T  21088656 tttttaagctcgttg 21088670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 23465328 - 23465604
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  23465328 ggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23465427  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  ||||    
T  23465428 tagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcg 23465527  T
Q  250 actcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
     ||||||||  | ||||||||||| |||||  | ||| ||||||| |||    ||||||| |||||||| |||||||    
T  23465528 gctcagagcgtcgtaaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacctcatatt 23465604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 23474293 - 23474613
Alignment:
Q  5 cagtctgcttcttcatatgtaatggatctattttgtnnnnnnncaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcat 104  Q
    ||||||||||| ||| |||| |||||||||| ||||       ||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||    
T  23474293 cagtctgcttcctcacatgtgatggatctatgttgtaaaaaa-caggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcat 23474391  T
Q  105 tcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctcc 204  Q
    |||| ||||||||||||||||||||| ||||||| ||||| |||||||| |||  |||||||||||| |||  ||||| ||||||||| ||||  |||||    
T  23474392 tcaagcaccattttgaggaagcatagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcc 23474491  T
Q  205 ttttttaagctcgttgtcatctataaaggttaaaactatgcttcgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatga 304  Q
    ||||| |||||| ||||  ||||||||||||  |||| |  |||| ||||||||| |||||||||||| ||||||  | ||| | ||||| |||    ||    
T  23474492 tttttgaagctcattgttgtctataaaggtttcaactttctttcggctcagagcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcga 23474591  T
Q  305 aagctgagaaaaacgtcatatt 326  Q
    ||||| ||||||||||||||||    
T  23474592 aagctaagaaaaacgtcatatt 23474613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 326
Target Start/End: Original strand, 23406672 - 23406950
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||    
T  23406672 caggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgac 23406771  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  ||||||||| ||  || | |  ||    
T  23406772 aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaagattttaattttcttt 23406871  T
Q  248 cgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    || ||||||||  ||||||||||||| |||||  | ||| ||||||| |||    ||||||| |||||||| |||||||    
T  23406872 cggctcagagcgtcataaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacttcatatt 23406950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 50 - 279
Target Start/End: Original strand, 23353825 - 23354054
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    |||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  23353825 ggtatcacaatctgttacatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23353924  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  ||||    
T  23353925 tagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcg 23354024  T
Q  250 actcagagcagcataaagatggcttgtgaa 279  Q
     || |||||| ||||||||||||| |||||    
T  23354025 gcttagagcatcataaagatggctcgtgaa 23354054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 23449195 - 23449471
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    |||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  23449195 ggtatcacaatctgttgcatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23449294  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||  |||||| ||||  |||||||| |||  |||| |  ||||    
T  23449295 tagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctccttttcgaagctcattgttgtctataaatgtttcaactttctttcg 23449394  T
Q  250 actcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
     |||| |||| ||||||||||||| |||||  | ||| ||||||| |||    ||||||| ||||||||||||||||    
T  23449395 gctcaaagcatcataaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt 23449471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 23441761 - 23442081
Alignment:
Q  5 cagtctgcttcttcatatgtaatggatctattttgtnnnnnnncaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcat 104  Q
    ||||||||||| ||| |||| |||||||||| ||||       ||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||    
T  23441761 cagtctgcttcctcacatgtgatggatctatgttgtaaaaaa-caggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcat 23441859  T
Q  105 tcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctcc 204  Q
    |||| ||||||||||||||||||||| ||||||| ||||| |||||||| |||  |||||||||||| |||  ||||| ||||||||| ||||  |||||    
T  23441860 tcaagcaccattttgaggaagcatagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcc 23441959  T
Q  205 ttttttaagctcgttgtcatctataaaggttaaaactatgcttcgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatga 304  Q
    ||||| |||||| ||||  ||||||||||||  |||| |  |||| ||| ||||| |||||||||||| ||||||  | ||| | ||||| |||    ||    
T  23441960 tttttgaagctcattgttgtctataaaggtttcaactttctttcggctccgagcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcga 23442059  T
Q  305 aagctgagaaaaacgtcatatt 326  Q
    ||||| ||||||||||||||||    
T  23442060 aagctaagaaaaacgtcatatt 23442081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 326
Target Start/End: Original strand, 23455958 - 23456235
Alignment:
Q  49 aggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataaca 148  Q
    ||||||||| |||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||| |||    
T  23455958 aggtatcacgatctgttccatatattgcttgcattctagaatctttttgagatcattcaaacaccattttgaggaagcgtagttttctgagaagatgaca 23456057  T
Q  149 atagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttc 248  Q
    ||||| |||  |||||||||||| | || ||||| || ||| |||||||| |||||||||| ||| || ||||  ||||| ||||||  |||| |  |||    
T  23456058 atagacacatgtgactcctcaatggttttgatgagtgttggtgagatctcatctcctttttgaaggtcattgttgtctatgaaggtttcaactttctttc 23456157  T
Q  249 gactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    |||||| |||| |||||||||||||||||||  | ||| ||||||| |||    ||||||| ||||||||||||||||    
T  23456158 gactcaaagcatcataaagatggcttgtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt 23456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 23480685 - 23480961
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    ||||||||||| |||||| || |||||||||||||  ||||||| |||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||||    
T  23480685 ggtatcacaatgtgttccttatatttcttgcattcaagaatcttcttgagctcattcaagcaccattttgaagaagcatagttttctgagaagatgacaa 23480784  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  ||||| |||||| |||| ||||| ||||||||||||||| |||||||||| |||||  ||||  ||||||||||||  |||| |  ||||    
T  23480785 tagatgcatgtgacttctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagcttattgttgtctataaaggtttcaactttctttcg 23480884  T
Q  250 actcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
     ||||||||| ||||||||||||| |||||  | ||| ||||||| |||    ||||||| ||||||||||||||||    
T  23480885 gctcagagcatcataaagatggctggtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt 23480961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 326
Target Start/End: Original strand, 23435407 - 23435669
Alignment:
Q  64 ttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgac 163  Q
    ||||||| ||| |||||||||| ||||||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||| ||||||||| ||  ||||    
T  23435407 ttccatatattgcttgcattctagaatctttttgagctcatttaagcaccattttgaagaagcatagttttctgagaagatgacaatagatgcatgtgac 23435506  T
Q  164 tcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcgactcagagcagcat 263  Q
    |||||||| |||| ||||| ||||||||||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  |||| ||||||||| |||    
T  23435507 tcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcggctcagagcatcat 23435606  T
Q  264 aaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    ||||||||| ||||||  | ||| | ||||| |||    ||||||| ||||||||||||||||    
T  23435607 aaagatggcatgtgaagtttctgcgggtatcctcacctcgaaagctaagaaaaacgtcatatt 23435669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 23500958 - 23501234
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    |||||||||||||| |||||| ||||||| |||||  |||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||||    
T  23500958 ggtatcacaatctgctccatatatttcttacattcaagaatctttttgagctcattcaagcaccattttgacgaagcatagttttctgagaagatgacaa 23501057  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  ||||    
T  23501058 tagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcg 23501157  T
Q  250 actcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
     ||||||||  | ||||||||||| |||||  | ||| ||||||| |||    ||||||| ||||||| ||||||||    
T  23501158 gctcagagcgtcgtaaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaatgtcatatt 23501234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 48 - 326
Target Start/End: Original strand, 23388312 - 23388590
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    |||||||||||||||||| |||| ||||||||||||   ||||||| |||||||||||||| ||||||||||||||||||||  ||||||| ||||| |     
T  23388312 caggtatcacaatctgttgcatatatttcttgcattgaagaatcttcttgagctcattcaagcaccattttgaggaagcataattttctgagaagatgat 23388411  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||| || ||   |||||||||||| |||| ||||| |||||| |||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  ||    
T  23388412 aattgacacgtgtgactcctcaatggctttgatgagtgctggtgagatctcatctcctttttcaagctcattgttgtctataaaggtttcaacttttttt 23388511  T
Q  248 cgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    || ||||||| | ||||||||||||| |||||  | ||| ||||||| |||    ||||||| ||||||||||||||||    
T  23388512 cggctcagagtatcataaagatggctcgtgaagtttctgcgagtatcatcacctcgaaagctaagaaaaacgtcatatt 23388590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 48 - 278
Target Start/End: Original strand, 21087310 - 21087540
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||  |    
T  21087310 caggtatcacaatttgttccttatatttcttgcattctagaatctttttgagctcattcaagcaccattttgaggaagcgtagttttctgagaagatgtc 21087409  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||| ||| ||  |||||| ||||| |||| ||||| | |||| | |||||  ||||||||||||||||  ||||  ||||||||||||  |||  |  ||    
T  21087410 aatcgatgcatgtgactcttcaatggctttgatgagttctggtgtgatcttatctccttttttaagcttattgttgtctataaaggtttgaacattattt 21087509  T
Q  248 cgactcagagcagcataaagatggcttgtga 278  Q
     | ||||||||| ||||||||||||||||||    
T  21087510 tggctcagagcatcataaagatggcttgtga 21087540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 279
Target Start/End: Original strand, 36025390 - 36025618
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||||||| |  ||  ||||||||||||| |||||||   ||| |||||||| |||||||||||||||||||||  || ||| ||||| ||    
T  36025390 caggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgac 36025489  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
     |||||| || | |||| ||||||||||| ||| | ||||| |||||||||||||||||||| |||||| |||||||||||||| |||| |||| | |||    
T  36025490 gatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataact-ttctt 36025588  T
Q  248 cgactcagagcagcataaagatggcttgtgaa 279  Q
       ||||||||  |||||||||||||||||||    
T  36025589 --gctcagagcttcataaagatggcttgtgaa 36025618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 36004631 - 36004817
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    ||||||||||||||| ||  |  |||||| |||||| |||||||   ||| |||||||| ||||||||||||||||| |||  || ||| ||||| || |    
T  36004631 ggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacga 36004730  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggtta 236  Q
    ||||| || | || || |||||||||| ||| | ||||| |||||||||||||||||||| |||||| |||||||||||||| ||||    
T  36004731 tagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgtta 36004817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 36017317 - 36017471
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| |||||||| || ||||| || |||||||||  ||  || || || || |||||| ||  ||||||||||||     
T  36017317 tttcttgcattctagaatcttgacgagttcattcaagcatcatttagaagaagcatagtctttcgagaatatgactatagatgcatctgactcctcaatg 36017416  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatcta 227  Q
    |||| ||| | |||||  ||||||||||||||||||| ||||||| |||||||||    
T  36017417 gctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcatcta 36017471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 21086940 - 21086891
Alignment:
Q  277 gaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  21086940 gaatgtactgcgagtatcctcattatgaaagctgagaaaaacgtcatatt 21086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 36034223 - 36034385
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaata----gatacacatgactcctc 168  Q
    ||||||||||||| |||||||   ||| ||||||||| |||||||||| |||||||||  || ||| || || |  |||    ||| ||  |||||||||    
T  36034223 tttcttgcattctagaatcttgacgagttcattcaaataccattttgaagaagcatagtcttttgagaatatgaatatatagagatgcatctgactcctc 36034322  T
Q  169 aatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaa 231  Q
    ||| |||| ||| | |||||  ||||||||||||||||||| ||||||| |||| ||||||||    
T  36034323 aatggctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcgtctataaa 36034385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 36009677 - 36009838
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||| ||| ||| |  ||| ||||||||| |||| ||   ||| |||||||| ||||||||||| ||||||||   || ||||||||| ||    
T  36009677 caggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgac 36009776  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttt 209  Q
     ||||||    ||||||||||||| |||| ||| | || ||  || ||||| ||||||||||    
T  36009777 tatagatgtgtatgactcctcaatggctttgattagtgatgatgatatctcatctccttttt 36009838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 279
Target Start/End: Original strand, 13500 - 13731
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||| ||    
T  13500 caggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagatgac 13599  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  || |||||||||  || | |  ||    
T  13600 aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtccataaaggtttcaattttcttt 13699  T
Q  248 cgactcagagcagcataaagatggcttgtgaa 279  Q
    ||  |||||||| |||||||||||||| ||||    
T  13700 cggatcagagcatcataaagatggcttctgaa 13731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 326
Target Start/End: Complemental strand, 9840 - 9562
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    |||||||||| |||||||||||| ||| |||||||||  ||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||| ||    
T  9840 caggtatcaccatctgttccatatattgcttgcattcaagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagattac 9741  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  || |||||||||  || | |  ||    
T  9740 aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtccataaaggtttcaattttcttt 9641  T
Q  248 cgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    || ||||||||| |||||||||||||||| ||  | ||| ||||||| |||    ||||||| ||||||| ||||||||    
T  9640 cggctcagagcatcataaagatggcttgttaagtttctgcgagtatcctcacctcgaaagctaagaaaaatgtcatatt 9562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 3397 - 3305
Alignment:
Q  56 acaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataaca 148  Q
    ||||||||||||||| |||||| |||||||  ||||||||||||||||||||| || |||||||||||||||||| ||| ||| |||||||||    
T  3397 acaatctgttccatatatttctagcattctataatctttttgagctcattcaagcatcattttgaggaagcatagttttatgagaagataaca 3305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 16334820 - 16334662
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| |||||||||||||||||||| ||||||||| ||||||| ||||| || |||||| |||||||||| |||||     
T  16334820 tttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagttttctgataagatgactatagatgcacatgactcttcaatg 16334721  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaa 231  Q
    |||| ||| | |||||  |||||||| ||||||||||||||||||||||||||||||||    
T  16334720 gctttgatcagtgctgatgagatctcatctccttttttaagctcgttgtcatctataaa 16334662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 16124831 - 16124989
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| |||||||||||||||||||| |||||||||  |||||||||||| || |||||| |||||||||| |||||     
T  16124831 tttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatg 16124930  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaa 231  Q
    |||| ||| | |||||  |||||||| |||||||||||||||||| |||| ||||||||    
T  16124931 gctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaa 16124989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 16126984 - 16127142
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| |||||||||||||||||||| |||||||||  |||||||||||| || |||||| |||||||||| |||||     
T  16126984 tttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatg 16127083  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaa 231  Q
    |||| ||| | |||||  |||||||| |||||||||||||||||| |||| ||||||||    
T  16127084 gctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaa 16127142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 12894778 - 12894610
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| ||||||||||||||||||||||||||||||  |  ||| ||||| ||||||||| || |||||||||||||     
T  12894778 tttcttgcattctagaatcttgacgagttcattcaaacaccattttgaggaagcatagtctattgagaagatgacaatagatgcatatgactcctcaatg 12894679  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaact 241  Q
    |||| ||| |||||||  || ||||| |||||||||| |||||| ||||||||||||||||||| ||||    
T  12894678 gctttgatcaatgctgaggatatctcatctcctttttgaagctcattgtcatctataaaggttataact 12894610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 167687 - 167562
Alignment:
Q  91 ctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaatagcttcgatgaatgctggc 190  Q
    |||||||| ||||||||| ||||||| ||||||||||||| ||||||| ||||| ||||||||| ||  | |||||||||| |||| ||||| || ||||    
T  167687 ctttttgatctcattcaagcaccattatgaggaagcatagttttctgagaagatgacaatagatgcatgttactcctcaatggctttgatgagtgttggc 167588  T
Q  191 gagatctcgtctccttttttaagctc 216  Q
    |||||||| |||||||||| ||||||    
T  167587 gagatctcatctcctttttgaagctc 167562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 11125522 - 11125564
Alignment:
Q  88 aatctttttgagctcattcaaacaccattttgaggaagcatag 130  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||    
T  11125522 aatcttttttagctcatccaaacaccatgttgaggaagcatag 11125564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 6097893 - 6097930
Alignment:
Q  101 tcattcaaacaccattttgaggaagcatagatttctga 138  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  6097893 tcatccaaacaccattttgaggaagcatagttttctga 6097930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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