View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_2 (Length: 574)
Name: NF3013_low_2
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 19 - 566
Target Start/End: Complemental strand, 45142106 - 45141559
Alignment:
| Q |
19 |
caaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagca |
118 |
Q |
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| T |
45142106 |
caaattgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagca |
45142007 |
T |
|
| Q |
119 |
gaatctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaa |
218 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45142006 |
gaatctttcatattagcttcaactttactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaa |
45141907 |
T |
|
| Q |
219 |
ttccgtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggc |
318 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| |
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| T |
45141906 |
ttccgtaagctccaagctcaccacacgttgaacgtacaagtcctaagagaccatgtttggatgtaacataatcatggccacgatttccagcaacagaggc |
45141807 |
T |
|
| Q |
319 |
agctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141806 |
agctacactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatg |
45141707 |
T |
|
| Q |
419 |
gccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccat |
518 |
Q |
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| T |
45141706 |
gccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccat |
45141607 |
T |
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| Q |
519 |
atttttccaatgcgaaagctactgtttcttcaacttgtttttcatctc |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141606 |
atttttccaatgcgaaagctactgtttcttcaacttgtttttcatctc |
45141559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 26 - 564
Target Start/End: Complemental strand, 45152744 - 45152204
Alignment:
| Q |
26 |
tgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctt |
125 |
Q |
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||||||||||||||||||||||| || || |||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
45152744 |
tgtccactaatataagccgattcatcggaagcaagaaacatagcagcttctgcaatatgaccagcctttagtgtaattcctttcaaattagcagaatcat |
45152645 |
T |
|
| Q |
126 |
tcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgta |
225 |
Q |
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|| | |||||||||||||||||| ||| | ||||||||||||||| |||||| |||||||||||| ||||| |||||||| ||||| ||||| || |
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| T |
45152644 |
tcccaatagcttcaacttcactcacatccttgttcagtgctctacataaaagaggtgtggcaacaccagaaggtgaaattgaattaactcttattccata |
45152545 |
T |
|
| Q |
226 |
agctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagctaca |
325 |
Q |
| |
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|||||||||||||| ||||||||| || ||||| |||| |||||||||||||| | ||||||||| || | | ||||||||| || |||| ||| |
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| T |
45152544 |
agctccaagctcactgcacgttgagcgaacaaggcctataagaccatgtttggatgttgtataatcatgtcctgcacatccagcaacaaagccagccaca |
45152445 |
T |
|
| Q |
326 |
ctggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatgg |
425 |
Q |
| |
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|| || || ||||||||||||||||| |||||||| |||||||| | ||| |||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
45152444 |
ctagccgtgcaaattatggatccacgaatttttctttccaccataacacgcgcagcgtgcttgatagttgtagctgatccacgaacattaatggccatgg |
45152345 |
T |
|
| Q |
426 |
tgttgtcaaattcattcagatcaaattctagtatgctgctagaca------taccaccttcaattccagcgttgctaaacataatgtctagggttccata |
519 |
Q |
| |
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|||||||||||||||| | |||| |||||||||| |||||| || ||||| |||||||||| ||||| ||||| ||||||| ||||||||| |
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| T |
45152344 |
tgttgtcaaattcatttacatca----ttagtatgctgatagacatagcagtagcacctccaattccagcattgctgaacatgatgtctaaggttccata |
45152249 |
T |
|
| Q |
520 |
tttttccaatgcgaaagctactgtttcttcaacttgtttttcatc |
564 |
Q |
| |
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|||||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
45152248 |
tttttccaatgcaaaagctacggtttcctcaacttgtttttcatc |
45152204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 23 - 462
Target Start/End: Complemental strand, 38256566 - 38256127
Alignment:
| Q |
23 |
ttgtgtccactaatataagccgattcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaat |
122 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||||| | |||||| | ||||||||| | |||||||||| ||| |
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| T |
38256566 |
ttgtgtccactaatataagcagattcatcagatgcaagaaacaaagcagtctctgcaatatgagcagccttcaatgtaattccctgcaaattagcataat |
38256467 |
T |
|
| Q |
123 |
ctttcatattagcttcaacttcactcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattcc |
222 |
Q |
| |
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| | |||||||||||||||| | |||| | ||||||||||||||||||||| || |||||| ||| |||||||||||||||||||| ||||| |
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| T |
38256466 |
caaggccaacagcttcaacttcactcggcaccatgtccagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattcc |
38256367 |
T |
|
| Q |
223 |
gtaagctccaagctcaccgcacgttgaacgtacaagtcctaagagaccatgtttggacgaaacataatcatggccacgataaccagcaacagaggcagct |
322 |
Q |
| |
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|||||||||||||||||||| | ||| | ||||| |||| ||||||||||| || | ||||||||| || | | | | ||||| | ||||| |
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| T |
38256366 |
ataagctccaagctcaccgcatgctgacctaacaaggcctataagaccatgttttgatgctgtataatcatgtcctgcacatctaccaacaaaaccagct |
38256267 |
T |
|
| Q |
323 |
acactggcagtacaaattatggatccacggatttttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggcca |
422 |
Q |
| |
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|||||||| || |||||||| ||||| || |||||||| |||||||| | ||||| ||| |||||||||| ||| || ||||||| || | |||| |
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| T |
38256266 |
acactggctgtgcaaattattgatcctcgtatttttctttccaccattacacgtgaagcatgcttgatagttgcagctgcaccacgaatgttcacagcca |
38256167 |
T |
|
| Q |
423 |
tggtgttgtcaaattcattcagatcaaattctagtatgct |
462 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||||| |
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|
| T |
38256166 |
tggtgttgtcaaattcatttaggttaaattctagtatgct |
38256127 |
T |
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