View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3013_low_20 (Length: 308)
Name: NF3013_low_20
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 11155700 - 11155402
Alignment:
| Q |
1 |
tatgcaatgacttaattttgatgattgatgttggtggctgattgatggagagnnnnnnnggttttatgttgattgatgaaaggctattaacttactatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11155700 |
tatgcaatgacttaattttgatgattgatgttggtggctgattgatggagagtttttttggttttatgttgattgatgagaggctattaacttactatta |
11155601 |
T |
|
| Q |
101 |
gtttttcttccatgtcaatacattttagtatttttagaggcatattttaaggccttcaaacttatgtaggtgaattacatgtttgttgctgtgttgataa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
11155600 |
gtttttcttccatgtcaatatattttagtatttttagaggcatattttaaggccttcaaacttatgtagatgaattacatg-ttgctgctgtgttgataa |
11155502 |
T |
|
| Q |
201 |
attgatcttaatttgtgatgttggtgaattacttacttataggtttaatgctcggaacaaattgattctatggcaccattttagtgttttgtgatgatgt |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11155501 |
attgatcttaatttgtgatgttgctgaattacttacttataggtttaatgctaggaacaaattgattctatggcagcattttagtgttttgtgatgatgt |
11155402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 61 - 222
Target Start/End: Complemental strand, 36245789 - 36245635
Alignment:
| Q |
61 |
gttttatgttgattgatgaaaggctattaacttactattagtttttcttccatgtcaatacattttagtatttttagaggcatattttaaggccttcaaa |
160 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| || || |||||||| |
|
|
| T |
36245789 |
gttttatgtcgattgatgagaggctattaacttactattagtttttct---atgtcaatacattatagtatttttagagtcatacttcaaatccttcaaa |
36245693 |
T |
|
| Q |
161 |
cttatgtaggtgaattacatgtttgttgctgtgttgataaattgatcttaatttgtgatgtt |
222 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |||| |
|
|
| T |
36245692 |
cttatgtaggtgaattaca----tgttgatgtgttgatatattgatcttaatttgtgttgtt |
36245635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University