View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_22 (Length: 281)
Name: NF3013_low_22
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 12631066 - 12631329
Alignment:
| Q |
1 |
cacagacggagacttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagct |
100 |
Q |
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|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631066 |
cacaaacggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagct |
12631165 |
T |
|
| Q |
101 |
actttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
12631166 |
actttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcctttactca |
12631265 |
T |
|
| Q |
201 |
taagtgtctatccatgcatttcttgaacttttcatctttttcatagtaattgattattcctata |
264 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12631266 |
taagtgtctatccatgcatttcttgaacttttcatctttttcatagtaattgattattcatata |
12631329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 45288876 - 45289134
Alignment:
| Q |
1 |
cacagacggagacttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagct |
100 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45288876 |
cacaaacggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagct |
45288975 |
T |
|
| Q |
101 |
actttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| |
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| T |
45288976 |
actttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctaatatttttgtagttcatgaaagtttctatttgcctttactca |
45289075 |
T |
|
| Q |
201 |
taagtgtctatccatgcatttcttgaacttttcatctttttcatagtaattgattattc |
259 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45289076 |
taagtgtctatcgatgcatttcttgaacttttcatctttttcatagtaattgattattc |
45289134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 31607910 - 31607683
Alignment:
| Q |
1 |
cacagacggagacttcattgttgacttaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagct |
100 |
Q |
| |
|
|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607910 |
cacaaacggagccttcattgttgaattaagatagactcttacatgcatattttgcaagcttcttaggaacggttttggcagataacatatttcgtaagct |
31607811 |
T |
|
| Q |
101 |
actttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatatttgtagttcatgaaattttctatttgcctttactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |
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|
| T |
31607810 |
actttctagccttacaaccgcccttggatgaaagacaatgaagatcattcatgtcctagtatttttgtagttcatgaaagtttctatttgcatttactca |
31607711 |
T |
|
| Q |
201 |
taagtgtctatccatgcatttcttgaac |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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|
| T |
31607710 |
taagtgtctatccatgcatttcttgaac |
31607683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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