View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_23 (Length: 280)
Name: NF3013_low_23
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 46496130 - 46495868
Alignment:
| Q |
1 |
cggatctgagtgattttacaattaccgacagcggcaaaagtggcggaacggagagcaacacaattggatccggtaagagaaaccattactgttttgaaag |
100 |
Q |
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| T |
46496130 |
cggatctgagtgattttacaattaccgacagcggcaaaagtggcggaacggagagaaacacaattggatccagtaagagaaaccattactgttttgaaag |
46496031 |
T |
|
| Q |
101 |
agaaaatggaagaagccagaggaaatgaaatgaagagaatggttttgagtttttaaaatgtggtgttggttagtgctttggaagctccagattatgagaa |
200 |
Q |
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| T |
46496030 |
agaaaatggaagaagccagaggaaatgaaatgaagagaatggttttgagtttttaaaatgtggtgttggttagtgctttggaagctccagattgtgagaa |
46495931 |
T |
|
| Q |
201 |
agttgttattgagtggacggtacgtgtgtgagtgctttggacatcattttaaattttgtttgt |
263 |
Q |
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| T |
46495930 |
agttgttattgagtggacggtacgtgtgtgagtgctttggacatcattttaaattttgtttgt |
46495868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38793514 - 38793278
Alignment:
| Q |
1 |
cggatctgagtgattttacaattaccgacagcggcaaaagtggcggaacggagagcaacacaattggatccggtaagagaaaccattactgttttgaaag |
100 |
Q |
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| T |
38793514 |
cggatctgagtgattttacggttaccggtggcggcgaaagtggcggaacggagagcgacgcaattggatccggtaagagaagccattgctgttttgaaag |
38793415 |
T |
|
| Q |
101 |
agaaaatggaagaagccagaggaaatgaaatga------------agagaatggttttgagtttttaaaat--gtggtgttggttagtgctttggaagct |
186 |
Q |
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| T |
38793414 |
agaaaatggaagaagccagaggaaatgaaatgaaatgaagagaagagagaatggttttgagtttttaaaatgcgttgtgtttgttagtactttggaagct |
38793315 |
T |
|
| Q |
187 |
ccagattatgagaaagttgttattgagtggacggtac |
223 |
Q |
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|| || | |||||| ||||||| |||||||||||||| |
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| T |
38793314 |
ccggagtgtgagaatgttgttactgagtggacggtac |
38793278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13876139 - 13876399
Alignment:
| Q |
1 |
cggatctgagtgattttacaattaccgacagcggcaaaagtggcggaacggagagcaacacaattggatccggtaagagaaaccattactgttttgaaag |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||| |||||| |
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| T |
13876139 |
cggatctgagtgattttacgattaccgacagcggcaaaagtggcggaacggagagcagcgcaattggatccggtaagagaaaccattatcgttatgaaag |
13876238 |
T |
|
| Q |
101 |
agaaaatggaagaagccagaggaaatgaaatgaagagaatggttttgagtttttaaaatgtggtgttggttagtgctttggaagctccagattatgagaa |
200 |
Q |
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| T |
13876239 |
agaaaatggaagaagccagaggaaatgaaatgaagagaatggttttcagtttttaaaatgtggtgttggttagtgctttggaagctccagattgtgagaa |
13876338 |
T |
|
| Q |
201 |
agttgttattgagtggacggtacgtgtgtgagtgctttggacatcattttaaattttgtttgt |
263 |
Q |
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| T |
13876339 |
a-tttttattgagtgggcggtacgtgtgtgagtgctttgga-atcattttaaattttgtttgt |
13876399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 18855714 - 18855600
Alignment:
| Q |
21 |
attaccgacagcggcaaaagtggcggaacggagagcaacacaattggatccggtaagagaaaccattactgttttgaaagagaaaatggaagaagccaga |
120 |
Q |
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|||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||| ||||| ||| |
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| T |
18855714 |
attaccgacaacggcgaaagtggcggaacggaaagcaacacaattggatctggtaaaagaagccattaccgttttgaaagagaaaatgatagaagtcagg |
18855615 |
T |
|
| Q |
121 |
ggaaatgaaatgaag |
135 |
Q |
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||||||||||||||| |
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| T |
18855614 |
ggaaatgaaatgaag |
18855600 |
T |
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