View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_25 (Length: 259)
Name: NF3013_low_25
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 41933312 - 41933549
Alignment:
| Q |
9 |
ccgttcatttattattccttgtaatgttggatatgagaagtgtattgnnnnnnntacaagtcacattaaataaatatacgatctagaacaagtttataaa |
108 |
Q |
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| T |
41933312 |
ccgttcatttattattccttgtaatgttggatatgagaagtgtattgagaaaaatacaagtcacattaaataaatatacgatctaaaacaagtttataaa |
41933411 |
T |
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| Q |
109 |
aggaaatactcttaatattataagccaattttagaaaatttattttgattcaatataaaaatatggaaaaatgcttgaatgacattgtggttgataatat |
208 |
Q |
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| T |
41933412 |
aggaaatactcataatattataagccaattttataaaatttattttaattcaatataaaaatctggggtattgcttgtgtgacattgtggttgataatat |
41933511 |
T |
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| Q |
209 |
tggtgacattgatgttacaagtagctttctttcatctc |
246 |
Q |
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||||||||||||||| ||||||||||||||||| |||| |
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| T |
41933512 |
tggtgacattgatgtcacaagtagctttctttcttctc |
41933549 |
T |
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