View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_low_27 (Length: 255)

Name: NF3013_low_27
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_low_27
NF3013_low_27
[»] chr7 (3 HSPs)
chr7 (1-255)||(47810451-47810699)
chr7 (21-94)||(43574000-43574073)
chr7 (33-106)||(22575183-22575260)
[»] chr2 (6 HSPs)
chr2 (20-234)||(17303418-17303635)
chr2 (12-164)||(33050804-33050956)
chr2 (35-125)||(44742186-44742276)
chr2 (42-111)||(25221754-25221823)
chr2 (29-93)||(35658270-35658334)
chr2 (34-111)||(31055555-31055631)
[»] chr4 (6 HSPs)
chr4 (37-254)||(22065661-22065881)
chr4 (34-163)||(20626617-20626745)
chr4 (16-131)||(23096484-23096599)
chr4 (20-87)||(50300480-50300547)
chr4 (33-131)||(12328410-12328508)
chr4 (70-111)||(51267480-51267521)
[»] chr3 (11 HSPs)
chr3 (41-247)||(557457-557662)
chr3 (20-163)||(42433402-42433544)
chr3 (35-131)||(8819367-8819463)
chr3 (37-108)||(47720898-47720969)
chr3 (33-131)||(30499003-30499101)
chr3 (35-135)||(26373383-26373483)
chr3 (189-247)||(8819527-8819585)
chr3 (16-131)||(9192299-9192414)
chr3 (35-111)||(35695182-35695259)
chr3 (178-247)||(42433567-42433636)
chr3 (40-106)||(28541480-28541545)
[»] chr6 (2 HSPs)
chr6 (11-247)||(31750111-31750347)
chr6 (34-111)||(1717608-1717685)
[»] chr5 (6 HSPs)
chr5 (32-247)||(3925416-3925633)
chr5 (36-106)||(35078046-35078116)
chr5 (13-104)||(18012884-18012975)
chr5 (35-98)||(4157606-4157669)
chr5 (41-131)||(5215099-5215189)
chr5 (209-250)||(17589806-17589847)
[»] scaffold0445 (1 HSPs)
scaffold0445 (38-131)||(10389-10482)
[»] scaffold0042 (1 HSPs)
scaffold0042 (35-135)||(31124-31224)
[»] chr1 (5 HSPs)
chr1 (34-105)||(43031352-43031422)
chr1 (39-94)||(23043546-23043601)
chr1 (17-106)||(14635722-14635810)
chr1 (178-243)||(23043397-23043462)
chr1 (210-247)||(33350506-33350543)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 47810451 - 47810699
Alignment:
Q  1 agtggagaagcataggatcaaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagc 100  Q
    |||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||||    ||    
T  47810451 agtggacaaccataggatcaaaaaaggttttgaattggcgaatggatcgaccgacaacatgttatccagatccacgtattagcaaccccctgaa----gc 47810546  T
Q  101 agcaggtataataactcttttgagcttaacagtacgataacagtcacaatgactgagatggattcgagacagtgccggagaaggtaaccctgaagacttg 200  Q
    |||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||    
T  47810547 agcaggtataataactctttcgagcttaacagtccaataacagtcacaatgactgagatggattagagacagtaccgaagaaggtaaccctgaagacttg 47810646  T
Q  201 aggcctatagatctcaacaaacctggaacatcagagagtcaagcacatgagcacc 255  Q
    ||||||  ||||||||||| |||||||||||  ||||||||||||||||||||||    
T  47810647 aggcctgcagatctcaacagacctggaacat--gagagtcaagcacatgagcacc 47810699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 43574000 - 43574073
Alignment:
Q  21 aaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaa 94  Q
    |||| |||||| ||||||||||||||   |||| |||||||||||| ||||||||||| |||||||||||||||    
T  43574000 aaaagggttttaaattggcgaatggactgaccgccaacacggtatcaagatccacgtaccagcaaccccctgaa 43574073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 22575183 - 22575260
Alignment:
Q  33 aattggcgaatggatcaacc-gacaacacggtatccaga---tccacgtatcagcaaccccctgaacaaagcagcagg 106  Q
    |||||||||||||||| ||| | |||||||||||| |||   |||||||| |||||||||||||||||||||||||||    
T  22575183 aattggcgaatggatcgaccagccaacacggtatcaagaagatccacgtaccagcaaccccctgaacaaagcagcagg 22575260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 17303635 - 17303418
Alignment:
Q  20 aaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactctt 119  Q
    |||||||||||  ||||||||||| |||| |||| ||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||| |||||    
T  17303635 aaaaaaggtttataattggcgaatagatccaccgccaacacgatatcgagatccacgtaccaacaaccccctgaacaaagcagcaggtataatagctctt 17303536  T
Q  120 ttgagcttaacagtacgataacagtcacaatgactgagatggattcga-gacagtgcc--ggagaaggtaaccctgaagacttgaggcctatagatctca 216  Q
    | |||||||||||| |||||||||||||||||||||||||||||  || | |||  ||   |||||||||||| ||||||||||| ||||  ||||||||    
T  17303535 tcgagcttaacagtccgataacagtcacaatgactgagatggataagaggtcagaaccagagagaaggtaaccttgaagacttgaagcctgcagatctca 17303436  T
Q  217 acaaacctggaacatcag 234  Q
    ||| ||||||||| ||||    
T  17303435 acagacctggaacttcag 17303418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 12 - 164
Target Start/End: Original strand, 33050804 - 33050956
Alignment:
Q  12 ataggatcaaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataa 111  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||  | |||||||||||||||||||||||||    
T  33050804 atagaatcaaaaaaggttttgaattggcgaatggatcgaccgccaacacggtatccaaatccacgtaccagtgatcccctgaacaaagcagcaggtataa 33050903  T
Q  112 taactcttttgagcttaacagtacgataacagtcacaatgactgagatggatt 164  Q
    || | ||||  | ||||||||| |||||||| |||||||||||||||| ||||    
T  33050904 tagccctttcaaacttaacagtccgataacaatcacaatgactgagatcgatt 33050956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 44742276 - 44742186
Alignment:
Q  35 ttggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagc 125  Q
    ||||| ||| |||||| || |||||| ||||| ||||||||||| |||||||| |||||||||| || || | |||||| |||||| ||||    
T  44742276 ttggcaaatagatcaatcgccaacacagtatcaagatccacgtaccagcaacctcctgaacaaaacaacatgcataatagctctttcgagc 44742186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 25221823 - 25221754
Alignment:
Q  42 atggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataa 111  Q
    ||||||| |||| || || |||| | ||||||||||  ||||||||||||||||||| ||||||||||||    
T  25221823 atggatcgaccgccagcatggtaccaagatccacgttccagcaaccccctgaacaaatcagcaggtataa 25221754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 35658334 - 35658270
Alignment:
Q  29 tttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctga 93  Q
    |||||||||||||||||||| |||| ||||||||||    |||||||||| |||||||| |||||    
T  35658334 tttgaattggcgaatggatcgaccgccaacacggtaaaacgatccacgtaccagcaacctcctga 35658270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 31055631 - 31055555
Alignment:
Q  34 attggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataa 111  Q
    ||||||| ||||||| |||| |||||||||| | | |||||||   ||||||||||||||| ||||||| ||||||||    
T  31055631 attggcgtatggatcgaccgccaacacggtaacaa-atccacggtccagcaaccccctgaaaaaagcagaaggtataa 31055555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 22065881 - 22065661
Alignment:
Q  37 ggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaacagtacg 136  Q
    |||||||||||| |||| |||||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||  | ||| |||||||||||| ||    
T  22065881 ggcgaatggatcgaccgccaacacggtatcaagatccacgtaccaacaacccccttaacaaagcagcaggtataatagttttttcgagcttaacagtccg 22065782  T
Q  137 ataacagtcacaatgactgagatggat-tcgagacagtgccggaga--aggtaaccctgaagacttgaggcctatagatctcaacaaacctggaacatca 233  Q
    |||||| ||||| |||| |||||||||  |  | |||  | |||||  | |||| ||||||||||||| ||||  ||||||||||| |||||||||||||    
T  22065781 ataacaatcacattgaccgagatggataacaggtcagaactggagaggacgtaatcctgaagacttgaagcctgcagatctcaacagacctggaacatca 22065682  T
Q  234 gagagtcaagcacatgagcac 254  Q
    |||||||||||||| ||||||    
T  22065681 gagagtcaagcacaagagcac 22065661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 20626617 - 20626745
Alignment:
Q  34 attggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaacagt 133  Q
    |||||||||||||||||||| |||||||||||| |||||||||||  ||||||||||||||| ||| |||||||| |||| ||||||||||||||| |||    
T  20626617 attggcgaatggatcaaccgccaacacggtatcaagatccacgtactagcaaccccctgaaccaagtagcaggta-aatagctcttttgagcttaatagt 20626715  T
Q  134 acgataacagtcacaatgactgagatggat 163  Q
     |||||||||||   |||||| ||||||||    
T  20626716 ccgataacagtcgatatgactaagatggat 20626745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 23096484 - 23096599
Alignment:
Q  16 gatcaaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataac 115  Q
    |||||||||  ||||| |||||| ||||||||| |||| |||||||||||| | ||||||||| ||||| ||| ||||| ||| || || | |||||| |    
T  23096484 gatcaaaaagagttttaaattggtgaatggatcgaccgccaacacggtatcaaaatccacgtaccagcatcccgctgaataaaacaacatgcataatagc 23096583  T
Q  116 tcttttgagcttaaca 131  Q
    ||||| |||| |||||    
T  23096584 tctttcgagcataaca 23096599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 50300480 - 50300547
Alignment:
Q  20 aaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaacc 87  Q
    |||||| |||| ||||||||||||||||| |||  |||||||||||| |||||||| |||||||||||    
T  50300480 aaaaaaagtttagaattggcgaatggatcgaccaccaacacggtatcaagatccacatatcagcaacc 50300547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 12328508 - 12328410
Alignment:
Q  33 aattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaaca 131  Q
    |||||| ||||||||| |||| ||| ||||||||  ||||||| || ||||||||||||||||||  |||| || |||||| |||||| |||| |||||    
T  12328508 aattggtgaatggatcgaccgtcaatacggtatcacgatccacataccagcaaccccctgaacaacacagccggcataatagctctttcgagcataaca 12328410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 51267521 - 51267480
Alignment:
Q  70 atccacgtatcagcaaccccctgaacaaagcagcaggtataa 111  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  51267521 atccacgttccagcaaccccctgaacaaagcagcaggtataa 51267480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 247
Target Start/End: Complemental strand, 557662 - 557457
Alignment:
Q  41 aatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaacagtacgataa 140  Q
    |||||||| |||| |||||||||||| ||||||||||| || |||||||||||||||| || ||||||||||| |||||| |||||||||||| ||||||    
T  557662 aatggatcgaccgccaacacggtatcaagatccacgtaccaacaaccccctgaacaaaacatcaggtataatagctctttcgagcttaacagttcgataa 557563  T
Q  141 cagtcacaatgactgagatggattcgagacagtgccggagaaggtaaccctgaagacttgaggcctatagatctcaacaaacctggaacatcagagagtc 240  Q
    || ||||| ||||||||||||||   ||  |      ||| | |||||||||||||||||| ||||  ||||||||||| |||||||||||||||||| |    
T  557562 caatcacattgactgagatggataacaggtaactggagaggacgtaaccctgaagacttgaagcctgcagatctcaacagacctggaacatcagagag-c 557464  T
Q  241 aagcaca 247  Q
    |||||||    
T  557463 aagcaca 557457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 42433402 - 42433544
Alignment:
Q  20 aaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactctt 119  Q
    |||||||||||  ||||| |||||||||| |||| |||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||| |||||    
T  42433402 aaaaaaggtttataattgacgaatggatccaccgccaacacggtatcgagatccacgtaccagcaacccc-tgaacaaagcagcaggtataatagctctt 42433500  T
Q  120 ttgagcttaacagtacgataacagtcacaatgactgagatggat 163  Q
    | || ||||||||| ||||||||| |||| ||||| ||||||||    
T  42433501 tcgaacttaacagtccgataacagccacattgactaagatggat 42433544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 8819367 - 8819463
Alignment:
Q  35 ttggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaaca 131  Q
    |||| ||||||||| |||| ||| ||||| || ||||||||||| ||||||||| ||||||||| ||||||| ||| || ||||||||||| |||||    
T  8819367 ttggtgaatggatccaccgccaatacggtttcaagatccacgtaccagcaacccactgaacaaatcagcaggcatagtagctcttttgagcataaca 8819463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 47720969 - 47720898
Alignment:
Q  37 ggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggta 108  Q
    |||||||||||| |||| ||||| |||||| ||||||||||| || |||||||||||||||| |||||||||    
T  47720969 ggcgaatggatcgaccgccaacaaggtatcaagatccacgtaccaacaaccccctgaacaaaacagcaggta 47720898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 30499003 - 30499101
Alignment:
Q  33 aattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaaca 131  Q
    |||||||||||||||| |||| ||||||||| || ||||||| ||| |||||||||||| ||||||||| || | ||| || |||||| |||| |||||    
T  30499003 aattggcgaatggatcgaccgccaacacggtttcaagatccaagtaccagcaaccccctcaacaaagcaacatgcatagtagctctttcgagcataaca 30499101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 26373383 - 26373483
Alignment:
Q  35 ttggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaacagta 134  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| |||||||| | |||||||| || || | | |||| |||||| |||| |||| |||    
T  26373383 ttggcgaatggatcgaccgtcaacacggtatcaagatccacgtaccagcaacctcttgaacaaaacaacaagcaaaatagctctttcgagcataacggta 26373482  T
Q  135 c 135  Q
    |    
T  26373483 c 26373483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 8819527 - 8819585
Alignment:
Q  189 cctgaagacttgaggcctatagatctcaacaaacctggaacatcagagagtcaagcaca 247  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| ||||    
T  8819527 cctgaagacttgagacctacagatctcaacagacctggaacatcagagaatcaatcaca 8819585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 9192299 - 9192414
Alignment:
Q  16 gatcaaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataac 115  Q
    |||||||||  ||||| |||||| || |||||| || | |||||||||||| | ||||||||| ||||| |||| |||||||| || || | |||||| |    
T  9192299 gatcaaaaagagttttaaattggtgagtggatcgactgccaacacggtatcaaaatccacgtaccagcagccccatgaacaaaacaacaagaataatagc 9192398  T
Q  116 tcttttgagcttaaca 131  Q
    ||||| |||| |||||    
T  9192399 tctttcgagcataaca 9192414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 111
Target Start/End: Complemental strand, 35695259 - 35695182
Alignment:
Q  35 ttggcgaatggatcaaccgacaacacggtatcca-gatccacgtatcagcaaccccctgaacaaagcagcaggtataa 111  Q
    |||||||||||||| |||| || ||||| | | | |||||||||| |||||| ||||| |||||||||||||||||||    
T  35695259 ttggcgaatggatcgaccgtcatcacggcaactaagatccacgtaccagcaatcccctaaacaaagcagcaggtataa 35695182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 42433567 - 42433636
Alignment:
Q  178 gagaaggtaaccctgaagacttgaggcctatagatctcaacaaacctggaacatcagagagtcaagcaca 247  Q
    ||| |||||||| ||||||||||||||||  ||||||||||| ||||| ||| |||| ||||||| ||||    
T  42433567 gaggaggtaaccttgaagacttgaggcctgcagatctcaacagacctgaaacttcagggagtcaaacaca 42433636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 28541480 - 28541545
Alignment:
Q  40 gaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcagg 106  Q
    ||||||||| |||| |||||||||||| | ||||| ||| || ||||||||||||||||| ||||||    
T  28541480 gaatggatcgaccgccaacacggtatcaa-atccatgtaccatcaaccccctgaacaaagtagcagg 28541545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 31750347 - 31750111
Alignment:
Q  11 cataggatcaaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaa-ccccctgaacaaagcagcaggtat 109  Q
    ||||| |||||||||||| | ||||||||||||||||| |||| ||||||||||  || ||||||||| |||||| ||||||||| ||||||||||||||    
T  31750347 catagaatcaaaaaaggtatagaattggcgaatggatcgaccgccaacacggta-acaaatccacgtaccagcaacccccctgaataaagcagcaggtat 31750249  T
Q  110 aataactcttttgagcttaacagtacgataacagtcacaatgactgagatggat-tcgagacagtgccggaga--aggtaaccctgaagacttgaggcct 206  Q
    |||| |||||| ||||   ||| | | ||||||| || | | ||||||||||||    |||||||  ||||||  |||| |||||||||||||||| |||    
T  31750248 aatagctctttcgagc---acaatccaataacagacatatttactgagatggataataagacagtatcggagaggaggtgaccctgaagacttgagacct 31750152  T
Q  207 atagatctcaacaaacctggaacatcagagagtcaagcaca 247  Q
      ||||||||||| | |||||  ||||||||||||||||||    
T  31750151 gcagatctcaacagagctggagaatcagagagtcaagcaca 31750111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 1717608 - 1717685
Alignment:
Q  34 attggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataa 111  Q
    ||||||| ||||||| |||| || ||||||| | | |||||||   ||||||||||||||||||||||||||||||||    
T  1717608 attggcgtatggatcgaccgccagcacggtaacaaaatccacgatccagcaaccccctgaacaaagcagcaggtataa 1717685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 3925633 - 3925416
Alignment:
Q  32 gaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataa---ctcttttgagctta 128  Q
    ||||||||||||||||| |||  |||||||||| | | ||||||||| |||||||||||||||||||||||||||||||||||   |||||| ||||       
T  3925633 gaattggcgaatggatcgaccaccaacacggtaacaa-atccacgtaccagcaaccccctgaacaaagcagcaggtataataatagctctttcgagc--- 3925538  T
Q  129 acagtacgataacagtcacaatgactgagatggat-tcgagacagtgccggaga--aggtaaccctgaagacttgaggcctatagatctcaacaaacctg 225  Q
    | ||| | ||||||  || | | |||||||||| |    |||||||  ||||||  |||| |||||||||||||||| |||  ||||||||||| |||||    
T  3925537 atagtccaataacaaccatatttactgagatggttaataagacagtatcggagaggaggtgaccctgaagacttgagacctgcagatctcaacagacctg 3925438  T
Q  226 gaacatcagagagtcaagcaca 247  Q
    |  |||||||||||||||||||    
T  3925437 gtgcatcagagagtcaagcaca 3925416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 35078046 - 35078116
Alignment:
Q  36 tggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcagg 106  Q
    ||||||||||||| |||| ||||||||| || ||||||||||| ||| |||||| |||| |||||||||||    
T  35078046 tggcgaatggatcgaccgccaacacggtttcaagatccacgtaccagaaaccccatgaagaaagcagcagg 35078116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 18012975 - 18012884
Alignment:
Q  13 taggatcaaaaaaggttttgaattggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagca 104  Q
    |||||| ||| | |||||| | ||||||||| |||  |||| ||| |||||||| ||||||||||| || ||||||| ||||||||||||||    
T  18012975 taggataaaagagggttttaagttggcgaattgattgaccgccaatacggtatcaagatccacgtaccaacaaccccttgaacaaagcagca 18012884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 4157669 - 4157606
Alignment:
Q  35 ttggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaa 98  Q
    |||||||||||||  |||| |||||||||||| ||||||||| | ||||| || ||||||||||    
T  4157669 ttggcgaatggattgaccgtcaacacggtatcaagatccacgcaccagcagcctcctgaacaaa 4157606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 5215189 - 5215099
Alignment:
Q  41 aatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaaca 131  Q
    |||||||| |||| |||||| || || ||||||||||| || ||||||| ||||||||||| || | ||| || |||||| |||| |||||    
T  5215189 aatggatcgaccgtcaacacagtttcaagatccacgtaccaacaaccccttgaacaaagcaacatgcatagtagctctttcgagcataaca 5215099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 17589806 - 17589847
Alignment:
Q  209 agatctcaacaaacctggaacatcagagagtcaagcacatga 250  Q
    ||||||||||| ||||||||||||||||| |||| |||||||    
T  17589806 agatctcaacagacctggaacatcagagaatcaaccacatga 17589847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 10482 - 10389
Alignment:
Q  38 gcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaaca 131  Q
    ||||||||||| |||| |||||| || || ||||||||||| ||||||||||||||||||||||||||| |||  | ||||||||||| |||||    
T  10482 gcgaatggatccaccgccaacacagtttcaagatccacgtaccagcaaccccctgaacaaagcagcaggcatagaagctcttttgagcataaca 10389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 31224 - 31124
Alignment:
Q  35 ttggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcaggtataataactcttttgagcttaacagta 134  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| |||||||| |||||||||| || |||| | |||| |||||| |||| |||| |||    
T  31224 ttggcgaatggatcgaccgtcaacacggtatcaagatccacgtaccagcaacctcctgaacaaaacaccaggcaaaatagctctttcgagcataacggta 31125  T
Q  135 c 135  Q
    |    
T  31124 c 31124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 43031352 - 43031422
Alignment:
Q  34 attggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcag 105  Q
    ||||| ||||||||| |||| |||||||||| ||||||||||||| |||||| ||| |||||||||||||||    
T  43031352 attggtgaatggatctaccgccaacacggtaaccagatccacgtaccagcaa-cccatgaacaaagcagcag 43031422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 23043601 - 23043546
Alignment:
Q  39 cgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaa 94  Q
    |||||||||| |||  |||||||||||| | ||||||||| |||||||||||||||    
T  23043601 cgaatggatcgaccaccaacacggtatcaatatccacgtaccagcaaccccctgaa 23043546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 14635722 - 14635810
Alignment:
Q  17 atcaaaaaaggttttgaatt-ggcgaatggatcaaccgacaacacggtatccagatccacgtatcagcaaccccctgaacaaagcagcagg 106  Q
    ||||||||||| ||| || | |||||||||||| |||| |||||||||| | | ||||||||| ||| | |||||||||||||||||||||    
T  14635722 atcaaaaaagggtttaaagtaggcgaatggatcgaccgtcaacacggtaacaa-atccacgtaccag-acccccctgaacaaagcagcagg 14635810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 23043462 - 23043397
Alignment:
Q  178 gagaaggtaaccctgaagacttgaggcctatagatctcaacaaacctggaacatcagagagtcaag 243  Q
    ||||||| | |||||||| |||||| | |  |||||||||||||||||||||||||  ||||||||    
T  23043462 gagaaggcatccctgaagtcttgagacatgcagatctcaacaaacctggaacatcaatgagtcaag 23043397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 33350506 - 33350543
Alignment:
Q  210 gatctcaacaaacctggaacatcagagagtcaagcaca 247  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  33350506 gatctcaataaacctgaaacatcagagagtcaagcaca 33350543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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