View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_28 (Length: 251)
Name: NF3013_low_28
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 26782770 - 26783017
Alignment:
| Q |
1 |
ttatggattgaaaatatggaatactctct--aatatannnnnnnaatcggtctctaattttaaatgtaagcaaaaagtctatacaacaaatacattgacc |
98 |
Q |
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| T |
26782770 |
ttatggattgaaagtatggaatactctctctaatatatttttttaatcggtctctaattttaaatgtaagcaaaaagtctatacaacaaatacattgacc |
26782869 |
T |
|
| Q |
99 |
nnnnnnnn---acctgtttccaatcttaaattgaagcttttcaagtcctttactatcttggtcctcaagagcatttccaagtttttctgtgacaatccat |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26782870 |
tttttttttttacctgtttccaatcttaaattgaagcttttcaagtcctttactatcttggtccttaagagcatttccaagtttttctgtgacaatccat |
26782969 |
T |
|
| Q |
196 |
tcattcactctactagtctctagtataccaataattgttgcctttgct |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26782970 |
tcattcactctactagtctctagtataccaataattgttgcctttgct |
26783017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 26816140 - 26816218
Alignment:
| Q |
163 |
agagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttg |
241 |
Q |
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| T |
26816140 |
agagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagtagaccaataattgttgcttttg |
26816218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 26789310 - 26789388
Alignment:
| Q |
163 |
agagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttg |
241 |
Q |
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| T |
26789310 |
agagcatctccaagtttttcagtgacaatccattcattcactctactagtctctagcagaccaataattgttgcttttg |
26789388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 26829828 - 26829904
Alignment:
| Q |
165 |
agcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttg |
241 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |
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| T |
26829828 |
agcatctccaagtttttcagtgacaatccattcattcactctactagcctctagtagaccaataatcgttgcctttg |
26829904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 41920924 - 41920844
Alignment:
| Q |
163 |
agagcatttccaagtttttctgtgacaatccattcattcactctactagtctctagtataccaataattgttgcctttgct |
243 |
Q |
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||||||| ||||||||| || |||||||||||||||||||||| ||||| ||| |||| |||||||| |||||||||||| |
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| T |
41920924 |
agagcatctccaagtttctcagtgacaatccattcattcactcgactagcctccagtagaccaataacagttgcctttgct |
41920844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 2301260 - 2301218
Alignment:
| Q |
162 |
aagagcatttccaagtttttctgtgacaatccattcattcact |
204 |
Q |
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| T |
2301260 |
aagagcatttccaagttttttagtgacaatccattcattcact |
2301218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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