View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_31 (Length: 250)
Name: NF3013_low_31
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 44386307 - 44386424
Alignment:
| Q |
1 |
tgcttagcttcatcaccaaatttcgtagatttaaataaatatataatatttgttataaaaaagtgcaatatctaatgttattttttaggaaatctaataa |
100 |
Q |
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| T |
44386307 |
tgcttagcttcatcaccaaattgcgtagatttaaataaatatataatatttgttataaaa-agtgcaatatctaatgttattttttaggaaatctaataa |
44386405 |
T |
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| Q |
101 |
attaacataatcaaatgga |
119 |
Q |
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| T |
44386406 |
attaacataatcaaatgga |
44386424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 44386503 - 44386545
Alignment:
| Q |
198 |
gtctctctgacacataaacctcaaacctattttcttgtctgtg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44386503 |
gtctctctgacacataaacctcaaacctattttcttgtgtgtg |
44386545 |
T |
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