View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_33 (Length: 244)
Name: NF3013_low_33
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 19151137 - 19150905
Alignment:
| Q |
10 |
atgaaaagataaagattgaaccatttcttcaattaattatttaatagaaactttgacnnnnnnnttgagagaaacttttttcctcaaagtcattttggat |
109 |
Q |
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| T |
19151137 |
atgaaaagataaagattgaaccatttcttcaattaattatttaatagaaactttgacaaaaaaattgagagaaacttttttcctcaaagtcattttggat |
19151038 |
T |
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| Q |
110 |
gtacgtaattgataaaaatattgtaccattttgatgtgtacatttggatagatcaagatttttagaatcattccttaaaaagagttttagaatcatgctt |
209 |
Q |
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| T |
19151037 |
gtacgtactcgataagaatattgtaccattttgatgtgtacatttggatagatcaagatttttagaatcattccttaaaaagagttttagaatcatgctt |
19150938 |
T |
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| Q |
210 |
agtttttaaaattatgaggtgtgtaaagtgctt |
242 |
Q |
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| T |
19150937 |
agtttttaaaattatgaggtgtgtaaagtgctt |
19150905 |
T |
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