View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3013_low_36 (Length: 237)
Name: NF3013_low_36
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 25290578 - 25290352
Alignment:
| Q |
1 |
caaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaatgtacaaagagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25290578 |
caaatcactcaaatagaggcaagccaaatcaaacaaaatccccttcttaatttcttagaaatagcctcatttaaccaacattcaaaatgtacatagagat |
25290479 |
T |
|
| Q |
101 |
tatggggtattatgaagtgaaattctaaccaacacatc-atcctttgccaaatcctcataaccacat--cagtgtaagaaaagatgtgacgtcgtttctt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
25290478 |
tatggggtattatgaagtgaaattctaaccaacacatcaatcctttgccaaatcctcataaccacatcacaatgtaagaaaagatgtgacgtcgtttctt |
25290379 |
T |
|
| Q |
198 |
cctccctcccacaaagcatgcaactct |
224 |
Q |
| |
|
|||||| |||||||| ||||||||||| |
|
|
| T |
25290378 |
cctcccacccacaaaacatgcaactct |
25290352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 19251136 - 19251230
Alignment:
| Q |
10 |
caaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaatgtacaaagagattatg |
104 |
Q |
| |
|
|||||||| ||| |||||||||| |||| |||||||| | ||| |||||||||||||| || ||||||||||||||| | ||||| |||||||| |
|
|
| T |
19251136 |
caaatagaatcaacccaaatcaaataaaaaccccttctaattttattagaagtagcctccttaaaccaacattcaaaacgaacaaaaagattatg |
19251230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4282205 - 4282118
Alignment:
| Q |
1 |
caaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaat |
88 |
Q |
| |
|
||||| || |||||||| |||||||||||||| ||||| |||| ||||| |||| |||| | |||||||| ||||||||||||||| |
|
|
| T |
4282205 |
caaataacccaaatagaagcaagccaaatcaagcaaaatccccgtcttattttcctagatgaagcctcataataccaacattcaaaat |
4282118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University