View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_low_39 (Length: 236)

Name: NF3013_low_39
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_low_39
NF3013_low_39
[»] chr7 (3 HSPs)
chr7 (61-221)||(34905590-34905750)
chr7 (1-65)||(34902811-34902875)
chr7 (1-65)||(3626138-3626202)
[»] chr8 (1 HSPs)
chr8 (1-65)||(28522457-28522521)
[»] chr6 (5 HSPs)
chr6 (1-65)||(513274-513338)
chr6 (1-65)||(8370330-8370394)
chr6 (1-65)||(15137842-15137906)
chr6 (1-65)||(34844535-34844599)
chr6 (1-65)||(2851675-2851739)
[»] chr5 (1 HSPs)
chr5 (1-65)||(39175760-39175824)
[»] chr4 (4 HSPs)
chr4 (1-65)||(34132843-34132907)
chr4 (1-65)||(53912632-53912696)
chr4 (1-51)||(29581355-29581405)
chr4 (11-64)||(21180890-21180943)
[»] chr3 (1 HSPs)
chr3 (1-65)||(35203749-35203813)
[»] chr2 (4 HSPs)
chr2 (1-65)||(21467195-21467259)
chr2 (1-65)||(24840333-24840397)
chr2 (1-65)||(26647498-26647562)
chr2 (1-65)||(33224843-33224907)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 34905590 - 34905750
Alignment:
Q  61 aattccaaactttcaatacacactataaaactagtgtgttgtataaagagcactttaaacaagaacaaaagaacactgagcnnnnnnnttgtgaattaga 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  34905590 aattccaaactttcaatacacactataaaactagtgtgttgtataaagagcactttaaacaagaacaaaagaacactgagcaaaaaaattgtgaattaga 34905689  T
Q  161 taaaaatatagtctattattatcctgaacttagctgatgcaatgttagttaaggttgctaa 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905690 taaaaatatagtctattattatcctgaacttagctgatgcaatgttagttaaggttgctaa 34905750  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34902811 - 34902875
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34902811 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatctacacaaattc 34902875  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3626202 - 3626138
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  3626202 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 3626138  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28522521 - 28522457
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  28522521 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 28522457  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 513338 - 513274
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  513338 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 513274  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8370394 - 8370330
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  8370394 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 8370330  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 15137842 - 15137906
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  15137842 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 15137906  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34844599 - 34844535
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  34844599 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 34844535  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2851675 - 2851739
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||  ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||    
T  2851675 acacaaaaagttatacaccgaattattatgctttagaattataaatttaaaatctacacaaattc 2851739  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 39175760 - 39175824
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  39175760 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 39175824  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34132843 - 34132907
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  34132843 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 34132907  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 53912632 - 53912696
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  53912632 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 53912696  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29581405 - 29581355
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttata 51  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29581405 acacaaaaaattatacaccaaattattatgctttagaattataaatttata 29581355  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 21180943 - 21180890
Alignment:
Q  11 ttatacaccaaattattatgctttagaattataaatttatattctacacaaatt 64  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  21180943 ttatacaccaaattattatactttagaattataaatttataatctacacaaatt 21180890  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 35203813 - 35203749
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  35203813 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 35203749  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21467195 - 21467259
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  21467195 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 21467259  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24840397 - 24840333
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  24840397 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 24840333  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26647562 - 26647498
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  26647562 acacaaaatgttatacaccaaattattatgctttagaattataaatttataatttacacaaattc 26647498  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 33224843 - 33224907
Alignment:
Q  1 acacaaaatattatacaccaaattattatgctttagaattataaatttatattctacacaaattc 65  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  33224843 acacaaaatgtaatacaccaaattattatgctttagaattataaatttataatttacacaaattc 33224907  T

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