View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_7 (Length: 451)
Name: NF3013_low_7
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 279 - 437
Target Start/End: Complemental strand, 41794059 - 41793901
Alignment:
| Q |
279 |
cgatttatttttgtgagagacgaaaatgagacttcacctaattattacgaaaatttttcatggctgcaaaataattaagcagatggcatgttaggcacta |
378 |
Q |
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| T |
41794059 |
cgatttatttttgtgagagacgaaaatgagacttcacctaattattacgaaaattttccatggctgcaaaataattaagcagatggcatgttaggcacta |
41793960 |
T |
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| Q |
379 |
tgccaatgcttacatctattcatgcattttgtcatgaacgattgataggtacttggagt |
437 |
Q |
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| T |
41793959 |
tgccaatgcttacatctattcatgcattttgtcatgaacgattgataggtacttggagt |
41793901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 84 - 170
Target Start/End: Complemental strand, 41794206 - 41794120
Alignment:
| Q |
84 |
ggattaactagttttttcagatctacgaagcacaaatagaaaccgaacacggcacacaacagacgcgccaacatcgttaataatttg |
170 |
Q |
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| T |
41794206 |
ggattaactagttttttcagatctacgaagcacaaatagaaaccgaacacgacacacaacagactcgccaacatcgttaataatttg |
41794120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 41794270 - 41794226
Alignment:
| Q |
18 |
catctaactattagtttataggattaattagtttggaacaaaatt |
62 |
Q |
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| T |
41794270 |
catctaattattactttataggattaattagtttggtacaaaatt |
41794226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 31579257 - 31579222
Alignment:
| Q |
183 |
cataattcagtgtaattatgtgttggtgtcggacac |
218 |
Q |
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| T |
31579257 |
cataattcagtgtaattatgtgtcggtgtcggacac |
31579222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 25452180 - 25452143
Alignment:
| Q |
183 |
cataattcagtgtaattatgtgttggtgtcggacaccg |
220 |
Q |
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| T |
25452180 |
cataattcagtgtaattatgtgtcggtgtcagacaccg |
25452143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 2288199 - 2288163
Alignment:
| Q |
183 |
cataattcagtgtaattatgtgttggtgtcggacacc |
219 |
Q |
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| T |
2288199 |
cataattcaatgtaattatgtgtcggtgtcggacacc |
2288163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 29787401 - 29787373
Alignment:
| Q |
183 |
cataattcagtgtaattatgtgttggtgt |
211 |
Q |
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| T |
29787401 |
cataattcagtgtaattatgtgttggtgt |
29787373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 30298479 - 30298443
Alignment:
| Q |
183 |
cataattcagtgtaattatgtgttggtgtcggacacc |
219 |
Q |
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| T |
30298479 |
cataattcagtgtaatcatgtgtcggtgtcggacacc |
30298443 |
T |
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