View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_9 (Length: 418)
Name: NF3013_low_9
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 401
Target Start/End: Original strand, 21365297 - 21365674
Alignment:
| Q |
23 |
atgtcaaaatcaatttacatgcacagaatcctaaaaattaatccaaacatacactcactaaaccagaaattttcttctggtattgcacattgctcttctc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
21365297 |
atgtcaaaatcaatttacatgcacagaatcctaaaa-ttaatccaaacatacactcactaaaccagaaattttcttcaagtattgcacattactcttctc |
21365395 |
T |
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| Q |
123 |
tcacgtcacttcaaatatgtacaatgcgatagaattagaaattatgaatataactaatccattaacaaattagaaactaacattactgnnnnnnnnnnnn |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21365396 |
tcacgtcacttcaaatatgtacaatgcgatagaattagaaattatgaatataactaatccattaacaaattagaaactaacattactgaaaataaaattc |
21365495 |
T |
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| Q |
223 |
nnnnnnnnnnnnnctattgcaacaacgaaagcctaaatttggaaatcgaacctgtttcaattcctcttcattgatcaacgcattctcagacgaaacactt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21365496 |
aaaaaaaggaaaactattgcaacaacgaaagcctaaatttggaaatcgaacctgtttcaattcctcttcattgatcaacgcattctcagacgaaacactt |
21365595 |
T |
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| Q |
323 |
ctctgagcaacatcttgttcctgttctccctcttgctccttcggttgctcatgattcttctgttcttctcggctgatat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21365596 |
ctctgagcaacatcttgttcctgttctccctcttgctccttcggttgctcatgattcttctgttcttctcggctgatat |
21365674 |
T |
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