View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3014_high_1 (Length: 371)
Name: NF3014_high_1
Description: NF3014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3014_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 364128 - 364348
Alignment:
| Q |
12 |
atgaagaatcatcgaatctgaatgtgatgaacaaaccacctttgaagaagacaaagacacttccttccctcaatctcagagtttcagttactcctcccaa |
111 |
Q |
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| T |
364128 |
atgaagaatcatcgaatctgaatgtgatgaacaaaccacctttgaagaagacaaagacacttccttccctcaatctcagagtttctgttactcctcccaa |
364227 |
T |
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| Q |
112 |
tcccaatgacaacaatggaattggaggaacttcaactactaaaactgatttctcagaacaacaatggaactacccttctttccttggcattggcagcacc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
364228 |
tcccaatgacaacaatggaattggaggaacttcaactactaaaactgatttctcagaacaacaatggaactacccttctttccttggcattggcagcacc |
364327 |
T |
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| Q |
212 |
tccagaaaaagaagacaacca |
232 |
Q |
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||||||||||||||||||||| |
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| T |
364328 |
tccagaaaaagaagacaacca |
364348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 364413 - 364472
Alignment:
| Q |
297 |
acgaccacaacaaaaccacctcctcacttcttccacaaccttcctcttcctccatcacca |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
364413 |
acgaccacaacaaaaccacctcctcacttcttccacaaccttcctcttcctccatcacca |
364472 |
T |
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