View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3014_high_5 (Length: 244)
Name: NF3014_high_5
Description: NF3014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3014_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 37614994 - 37614773
Alignment:
| Q |
4 |
aatgttcccgtaaatttagcgaagggcaatgcgtataatacatgcaaggtttgatgtcaatgatagtgtgagatccacagttttaatgtcatccatctac |
103 |
Q |
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| T |
37614994 |
aatgtccccgtaaactcagcgaaggacaatgcgcgtaatatatgcaaggtttgatgtcaatgatagtatgagatccacagttttaatgtcatccatctac |
37614895 |
T |
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| Q |
104 |
aaacaaagatatttgcaggtgttggcttaattcgattataggtgggccaaatcaaccacat-ttgataagtaaccaatttgtgaggccgagagaaaactt |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37614894 |
aaacaaagatatttgcaggtgttggcttaattcgattataggtgggccaaatcaaccacatattgataagtaaccaatttgtgaggccgagagaaaactt |
37614795 |
T |
|
| Q |
203 |
aatttggtgagcctcctacagt |
224 |
Q |
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|||||||||||||||||||||| |
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| T |
37614794 |
aatttggtgagcctcctacagt |
37614773 |
T |
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