View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3014_high_7 (Length: 241)
Name: NF3014_high_7
Description: NF3014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3014_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32730177 - 32729956
Alignment:
| Q |
1 |
tgatgtgtttcaatgggccaagttttagattatcacattcaagaattttaagagcctgcatatatatatgttataccaaatgattaattaattatacact |
100 |
Q |
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| T |
32730177 |
tgatgtgtttcaatgggccaagttttagattatcacattcaagaattttaagagcctgcatatatatatgttataccaaatgattaattaattatacact |
32730078 |
T |
|
| Q |
101 |
ttaattccaagactcaaagtgtgagtttgtatacattatcattttaattttaatatatactcctctttggatagaattaacttaccgttggcctgatatg |
200 |
Q |
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| T |
32730077 |
ttaattccaagactcaaagtgtgagtttgtatac--tatcattttaattttaatatatactcctctttggatagaattaacttaccgttggcctgatatg |
32729980 |
T |
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| Q |
201 |
gccattattgttccaccatgaatc |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
32729979 |
gccattattgttccaccatgaatc |
32729956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 38090059 - 38089987
Alignment:
| Q |
3 |
atgtgtttcaatgggccaagttttagattatcacattcaagaattttaagagcctgcatatatatatgttata |
75 |
Q |
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|||||| ||||||| ||||||||||||||||||||| |||||| || ||||||||||| ||| | |||||||| |
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| T |
38090059 |
atgtgtctcaatggaccaagttttagattatcacatccaagaaattgaagagcctgcagataaacatgttata |
38089987 |
T |
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