View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3014_low_1 (Length: 475)
Name: NF3014_low_1
Description: NF3014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3014_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 36400664 - 36401113
Alignment:
| Q |
20 |
gttgcaactttacaaatgctttccaagaagtgttaattaaagcaatgaacacaaaacaccaaagtgttt-aacaaccacaatgatcaaataattaagcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36400664 |
gttgcaactttacaaatgctttccaagaagtattaattaaagcaatgtacacaaaacaccaaagtgttttaacaaccacaatgatcaaataattaagcat |
36400763 |
T |
|
| Q |
119 |
gtcaccaaaccacttagtacactcatcacattcaaacactaatctattatcacttataaacactccaattggtttttataaactatatgatatgatatga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36400764 |
gtcaccaaaccacttagtacactcatcacattcaaacactaatctattatcacttataaacactccaattggtttttataaactatatgatatgatatga |
36400863 |
T |
|
| Q |
219 |
ttgatacatatcaccttatcttgctattt---ttatatacttctcactgcaatccatcttgcactctttaactaattaaaaaggaaaaattattatccnn |
315 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36400864 |
ttgatacatatcaccttatcttgctattttaattatatacttctcactgcaatccatcttgcactctttaactaattaaaaaggaaaaattattatcc-- |
36400961 |
T |
|
| Q |
316 |
nnnnnnnnnngtgcctaaaaaagttttcaatttttaaaatatgaaaattaacttagaagaaagattttttagcaggaggtcttccaactgctctcataag |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36400962 |
ttttttttttgtgcctaaaaaagttttcaatttttaaaatatgaaaactaacttagaagaaagattttttagcaggaggtcttccaactgctctcataag |
36401061 |
T |
|
| Q |
416 |
attagcaatctcaagaactctagccactttagttcctctttttgcctttgct |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36401062 |
attagcaatctcaagaactctagccactttagttcctctttttgcctctgct |
36401113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 462
Target Start/End: Original strand, 21427486 - 21427581
Alignment:
| Q |
367 |
cttagaagaaagattttttagcaggaggtcttccaactgctctcataagattagcaatctcaagaactctagccactttagttcctctttttgcct |
462 |
Q |
| |
|
|||| ||||| ||| |||| | ||||| ||||||||| |||||||||| || |||||||||||||| || | | ||||||||||||||| |||| |
|
|
| T |
21427486 |
cttaaaagaaggatcttttggaaggagctcttccaacaactctcataaggttggcaatctcaagaacccttgaaattttagttcctcttttagcct |
21427581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University