View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3014_low_12 (Length: 227)
Name: NF3014_low_12
Description: NF3014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3014_low_12 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 10725424 - 10725201
Alignment:
| Q |
7 |
atttccttgcggagatctctaaaacctttatattgcggttgcaattgtggttgcggataacaattttaaactatgataatgagataaaaagacaataa-- |
104 |
Q |
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| T |
10725424 |
atttccttgcggagatctctaaaacctttatattgcggttgcaattgtggttgcggataacaattttaaactatgataatgagataaaaagactataaaa |
10725325 |
T |
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| Q |
105 |
-atagcttaattatgttatcnnnnnnnatacttgagatgtaaaagaagttgatttgttgcattaggataatattaagaagaaacctcaagggcgaggaac |
203 |
Q |
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| T |
10725324 |
tatagcttaattatgttatcttttttaatacttgagatgtaaaagaagttgatttgttgcattaggataatattaagaagaaacctcaagggcgaggaac |
10725225 |
T |
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| Q |
204 |
agatacaaagagaacaagaggaaa |
227 |
Q |
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| T |
10725224 |
agatacgaagagaacaagaggaaa |
10725201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 8069578 - 8069620
Alignment:
| Q |
18 |
gagatctctaaaacctttatattgcggttgcaattgtggttgc |
60 |
Q |
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| T |
8069578 |
gagatctctaaaacctttatattgcggctgcaattgcggttgc |
8069620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 14337132 - 14337168
Alignment:
| Q |
13 |
ttgcggagatctctaaaacctttatattgcggttgca |
49 |
Q |
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| T |
14337132 |
ttgcggagacctctaaaaccattatattgcggttgca |
14337168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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