View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3014_low_3 (Length: 435)

Name: NF3014_low_3
Description: NF3014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3014_low_3
NF3014_low_3
[»] chr1 (22 HSPs)
chr1 (248-404)||(2139807-2139964)
chr1 (21-206)||(2140002-2140187)
chr1 (396-435)||(30611211-30611250)
chr1 (396-435)||(19986478-19986517)
chr1 (398-435)||(16268045-16268082)
chr1 (404-435)||(19885981-19886012)
chr1 (405-435)||(30293368-30293398)
chr1 (405-435)||(42607522-42607552)
chr1 (394-431)||(10654019-10654056)
chr1 (402-435)||(34029077-34029110)
chr1 (403-435)||(9881550-9881582)
chr1 (403-435)||(13944509-13944541)
chr1 (403-435)||(14118528-14118560)
chr1 (403-435)||(18794049-18794081)
chr1 (403-435)||(23281366-23281398)
chr1 (403-435)||(25088014-25088046)
chr1 (403-435)||(28112719-28112751)
chr1 (403-435)||(30293011-30293043)
chr1 (403-435)||(33753223-33753255)
chr1 (403-435)||(34028719-34028751)
chr1 (403-435)||(37199277-37199309)
chr1 (403-435)||(45305765-45305797)
[»] chr8 (14 HSPs)
chr8 (384-435)||(7041980-7042031)
chr8 (402-435)||(6843492-6843525)
chr8 (395-435)||(37393467-37393507)
chr8 (404-435)||(8654292-8654323)
chr8 (397-435)||(26736117-26736155)
chr8 (404-434)||(29026967-29026997)
chr8 (402-435)||(30872780-30872813)
chr8 (402-435)||(35224123-35224156)
chr8 (391-435)||(9495379-9495423)
chr8 (403-435)||(11198561-11198593)
chr8 (403-435)||(23244871-23244903)
chr8 (395-435)||(24456724-24456764)
chr8 (403-435)||(24457008-24457040)
chr8 (391-435)||(39912275-39912318)
[»] chr4 (6 HSPs)
chr4 (397-435)||(32385167-32385205)
chr4 (395-435)||(46621283-46621323)
chr4 (388-435)||(15985449-15985496)
chr4 (405-435)||(1157203-1157233)
chr4 (403-435)||(11102331-11102363)
chr4 (403-435)||(46620925-46620957)
[»] chr6 (5 HSPs)
chr6 (397-435)||(33544814-33544852)
chr6 (404-435)||(24604874-24604905)
chr6 (404-435)||(33971927-33971958)
chr6 (398-435)||(25551692-25551729)
chr6 (403-435)||(33548125-33548157)
[»] chr2 (16 HSPs)
chr2 (397-435)||(32933583-32933621)
chr2 (393-435)||(39454439-39454481)
chr2 (402-435)||(5720139-5720172)
chr2 (399-435)||(16655962-16655998)
chr2 (403-435)||(44610860-44610892)
chr2 (405-435)||(4121119-4121149)
chr2 (397-435)||(31450658-31450696)
chr2 (397-435)||(34820271-34820309)
chr2 (402-435)||(17856545-17856578)
chr2 (402-435)||(27132508-27132541)
chr2 (398-435)||(39150181-39150218)
chr2 (402-431)||(43183943-43183972)
chr2 (403-435)||(34820635-34820667)
chr2 (403-435)||(39912984-39913016)
chr2 (392-435)||(41660092-41660138)
chr2 (403-435)||(44915738-44915770)
[»] chr7 (6 HSPs)
chr7 (402-435)||(37144119-37144152)
chr7 (403-435)||(8769280-8769312)
chr7 (396-435)||(43726598-43726637)
chr7 (397-435)||(43140690-43140728)
chr7 (403-435)||(32706730-32706762)
chr7 (403-435)||(35085737-35085769)
[»] chr5 (13 HSPs)
chr5 (395-435)||(12593446-12593486)
chr5 (403-435)||(15267240-15267272)
chr5 (400-435)||(7399072-7399107)
chr5 (397-435)||(33699267-33699305)
chr5 (397-435)||(41860035-41860073)
chr5 (398-435)||(3879368-3879405)
chr5 (402-435)||(5152613-5152646)
chr5 (402-435)||(19615419-19615452)
chr5 (404-433)||(31909288-31909317)
chr5 (402-435)||(36752257-36752290)
chr5 (403-435)||(18514286-18514318)
chr5 (403-435)||(19204942-19204974)
chr5 (403-435)||(35263492-35263524)
[»] chr3 (15 HSPs)
chr3 (399-435)||(12123084-12123120)
chr3 (403-435)||(41208399-41208431)
chr3 (404-435)||(21918496-21918527)
chr3 (404-435)||(35580305-35580336)
chr3 (404-435)||(40410711-40410742)
chr3 (397-435)||(8846432-8846470)
chr3 (402-435)||(4846952-4846985)
chr3 (402-435)||(5348576-5348609)
chr3 (398-435)||(9028184-9028221)
chr3 (402-435)||(12123435-12123468)
chr3 (394-435)||(45871686-45871727)
chr3 (395-435)||(2078828-2078868)
chr3 (399-431)||(34521260-34521292)
chr3 (407-435)||(34521613-34521641)
chr3 (395-435)||(46766970-46767010)
[»] scaffold0809 (2 HSPs)
scaffold0809 (404-435)||(4337-4368)
scaffold0809 (403-435)||(4674-4706)
[»] scaffold0168 (1 HSPs)
scaffold0168 (403-435)||(11486-11518)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 248 - 404
Target Start/End: Complemental strand, 2139964 - 2139807
Alignment:
Q  248 tattgtgcctatttcgaacttccaaaatctcccttcccacttccaacttttataaacagtcttacaaactcatattacatattttaatccattttccaca 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2139964 tattgtgcctatttcgaacttccaaaatctcccttcccacttccaacttttataaacagtcttacaaactcatattacatattttaatccattttccaca 2139865  T
Q  348 ca-acacataatagtattttgtactttgtcacatacaatttaaaataaataaaaaata 404  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2139864 cacacacataatagtattttgtactttgtcacatacaatttaaaataaataaaaaata 2139807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 2140187 - 2140002
Alignment:
Q  21 gctaattgaaaaataattgtacaaaaacaggactattaatgtcacacaaataaagtacctattcttcaagctgtttaccaacatgagtacattagtactt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2140187 gctaattgaaaaataattgtacaaaaacaggactattaatgtcacacaaataaagtacctattctccaagctgtttaccaacatgagtacattagtactt 2140088  T
Q  121 aaggtatctccaatnnnnnnnnnnnnnnnnnntgcattttgcacagcaacataaaacagctcccacttagaccccacgcaccattt 206  Q
    ||||||||||||||                  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2140087 aaggtatctccaatatcatcatcatcatcatctgcattttgcacagcaacataaaacagcttccacttagaccccacgcaccattt 2140002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 30611211 - 30611250
Alignment:
Q  396 taaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30611211 taaaaaataggttaaattgcatttttggtcccttaactat 30611250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 396 - 435
Target Start/End: Complemental strand, 19986517 - 19986478
Alignment:
Q  396 taaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  19986517 taaaaaataggataaattgcatttttggtcccttaactat 19986478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 16268082 - 16268045
Alignment:
Q  398 aaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  16268082 aaaaataggctaaattgcatttttggtcccttaactat 16268045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Original strand, 19885981 - 19886012
Alignment:
Q  404 aggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||    
T  19885981 aggttaaattgcatttttggtcccttaactat 19886012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Complemental strand, 30293398 - 30293368
Alignment:
Q  405 ggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||    
T  30293398 ggttaaattgcatttttggtcccttaactat 30293368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Original strand, 42607522 - 42607552
Alignment:
Q  405 ggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||    
T  42607522 ggttaaattgcatttttggtcccttaactat 42607552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 431
Target Start/End: Original strand, 10654019 - 10654056
Alignment:
Q  394 aataaaaaataggttaaattgcatttttggtcccttaa 431  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  10654019 aataaaatataggctaaattgcatttttggtcccttaa 10654056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 34029110 - 34029077
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||||||||||||||||||||||||||||    
T  34029110 ataggctaaattgcatttttggtcccttaactat 34029077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 9881550 - 9881582
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  9881550 taggctaaattgcatttttggtcccttaactat 9881582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 13944509 - 13944541
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||| ||||||||    
T  13944509 taggttaaattgcatttttggtcctttaactat 13944541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 14118528 - 14118560
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  14118528 taggctaaattgcatttttggtcccttaactat 14118560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 18794081 - 18794049
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  18794081 taggctaaattgcatttttggtcccttaactat 18794049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 23281398 - 23281366
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  23281398 taggctaaattgcatttttggtcccttaactat 23281366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 25088014 - 25088046
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  25088014 taggctaaattgcatttttggtcccttaactat 25088046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 28112719 - 28112751
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  28112719 taggctaaattgcatttttggtcccttaactat 28112751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 30293011 - 30293043
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||| ||||||||    
T  30293011 taggttaaattgcatttttggtccattaactat 30293043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 33753223 - 33753255
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  33753223 taggctaaattgcatttttggtcccttaactat 33753255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 34028719 - 34028751
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  34028719 taggctaaattgcatttttggtcccttaactat 34028751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 37199309 - 37199277
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||| ||||||||||    
T  37199309 taggttaaattgcatttttggttccttaactat 37199277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 45305797 - 45305765
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  45305797 taggctaaattgcatttttggtcccttaactat 45305765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 435
Target Start/End: Complemental strand, 7042031 - 7041980
Alignment:
Q  384 atttaaaataaataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  7042031 atttaaaagaaataaaatataggctaaattgcatttttggtcccttaactat 7041980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 6843492 - 6843525
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||||    
T  6843492 ataggttaaattgcatttttggtcccttaactat 6843525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 37393467 - 37393507
Alignment:
Q  395 ataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  37393467 ataataaataggttaaattgtatttttggtcccttaactat 37393507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Complemental strand, 8654323 - 8654292
Alignment:
Q  404 aggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||    
T  8654323 aggttaaattgcatttttggtcccttaactat 8654292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 26736117 - 26736155
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  26736117 aaaaaattggttaaattgcatttttggtctcttaactat 26736155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 434
Target Start/End: Original strand, 29026967 - 29026997
Alignment:
Q  404 aggttaaattgcatttttggtcccttaacta 434  Q
    |||||||||||||||||||||||||||||||    
T  29026967 aggttaaattgcatttttggtcccttaacta 29026997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 30872780 - 30872813
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||||||||||||||||||||||||||||    
T  30872780 ataggctaaattgcatttttggtcccttaactat 30872813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 35224156 - 35224123
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||||||||||||||||||||||||||||    
T  35224156 ataggctaaattgcatttttggtcccttaactat 35224123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 9495423 - 9495379
Alignment:
Q  391 ataaataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||| | | ||||||||||||||||||||||||||||    
T  9495423 ataattaaaaaaaacgataaattgcatttttggtcccttaactat 9495379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 11198593 - 11198561
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  11198593 taggctaaattgcatttttggtcccttaactat 11198561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 23244903 - 23244871
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    ||||||| |||||||||||||||||||||||||    
T  23244903 taggttagattgcatttttggtcccttaactat 23244871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 24456724 - 24456764
Alignment:
Q  395 ataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||| | ||| ||||||||||||||||||||||||||||    
T  24456724 ataaaataaaggctaaattgcatttttggtcccttaactat 24456764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 24457040 - 24457008
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  24457040 taggctaaattgcatttttggtcccttaactat 24457008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 435
Target Start/End: Complemental strand, 39912318 - 39912275
Alignment:
Q  391 ataaataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||| ||| |||||||||| |||||||||||||||||||||    
T  39912318 ataaataataaa-aggttaaattacatttttggtcccttaactat 39912275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 32385205 - 32385167
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32385205 aaaaaataggttaaattgcatttttggtcccttaactat 32385167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 46621323 - 46621283
Alignment:
Q  395 ataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  46621323 ataaagaaaaggttaaattgcatttttggtcccttaactat 46621283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 15985449 - 15985496
Alignment:
Q  388 aaaataaataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||| |||||| |||||||||||||||||||||| |||||||||    
T  15985449 aaaaaaaaaaaaaaaaaggttaaattgcatttttggtctcttaactat 15985496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Original strand, 1157203 - 1157233
Alignment:
Q  405 ggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||    
T  1157203 ggttaaattgcatttttggtcccttaactat 1157233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 11102363 - 11102331
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||| ||||||||||||||||||||    
T  11102363 taggttaaattgtatttttggtcccttaactat 11102331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 46620925 - 46620957
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    ||||| |||||||||||||||||||||||||||    
T  46620925 taggtcaaattgcatttttggtcccttaactat 46620957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 33544814 - 33544852
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  33544814 aaaaaaaaggttaaattgcatttttggtcccttaactat 33544852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Original strand, 24604874 - 24604905
Alignment:
Q  404 aggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||    
T  24604874 aggttaaattgcatttttggtcccttaactat 24604905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Original strand, 33971927 - 33971958
Alignment:
Q  404 aggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||    
T  33971927 aggttaaattgcatttttggtcccttaactat 33971958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 25551729 - 25551692
Alignment:
Q  398 aaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  25551729 aaaaaaaggttaaattgtatttttggtcccttaactat 25551692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 33548125 - 33548157
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  33548125 taggctaaattgcatttttggtcccttaactat 33548157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 32933583 - 32933621
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  32933583 aaaatataggttaaattgcatttttggtcccttaactat 32933621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 435
Target Start/End: Original strand, 39454439 - 39454481
Alignment:
Q  393 aaataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  39454439 aaataaaatataggctaaattgcatttttggtcccttaactat 39454481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 5720139 - 5720172
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||||    
T  5720139 ataggttaaattgcatttttggtcccttaactat 5720172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 16655998 - 16655962
Alignment:
Q  399 aaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||| ||||||||||||||||||||    
T  16655998 aaaataggttaaattgtatttttggtcccttaactat 16655962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 44610860 - 44610892
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||||    
T  44610860 taggttaaattgcatttttggtcccttaactat 44610892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 405 - 435
Target Start/End: Complemental strand, 4121149 - 4121119
Alignment:
Q  405 ggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||    
T  4121149 ggttaaattgcatttttggtcccttaactat 4121119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 31450658 - 31450696
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  31450658 aaaaaaaaggctaaattgcatttttggtcccttaactat 31450696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 34820271 - 34820309
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  34820271 aaaaaaaaggtcaaattgcatttttggtcccttaactat 34820309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 17856578 - 17856545
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||||||||||||||||||||||||||||    
T  17856578 ataggctaaattgcatttttggtcccttaactat 17856545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 27132508 - 27132541
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||| ||||||||||||||||||||    
T  27132508 ataggttaaattgtatttttggtcccttaactat 27132541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 39150218 - 39150181
Alignment:
Q  398 aaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  39150218 aaaaataggctaaattgcatttttggtcctttaactat 39150181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 431
Target Start/End: Complemental strand, 43183972 - 43183943
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaa 431  Q
    ||||||||||||||||||||||||||||||    
T  43183972 ataggttaaattgcatttttggtcccttaa 43183943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 34820667 - 34820635
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||| ||||||||||||||||||||    
T  34820667 taggttaaattgtatttttggtcccttaactat 34820635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 39913016 - 39912984
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  39913016 taggctaaattgcatttttggtcccttaactat 39912984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 41660138 - 41660092
Alignment:
Q  392 taaataaaaaata---ggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||   |||||||||||||||||||||| ||||||||    
T  41660138 taaataaaaaataaaaggttaaattgcatttttggtcctttaactat 41660092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 44915738 - 44915770
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||| |||||||||||||    
T  44915738 taggttaaattgcatttttagtcccttaactat 44915770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 37144152 - 37144119
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||||    
T  37144152 ataggttaaattgcatttttggtcccttaactat 37144119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 8769280 - 8769312
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||||    
T  8769280 taggttaaattgcatttttggtcccttaactat 8769312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 435
Target Start/End: Complemental strand, 43726637 - 43726598
Alignment:
Q  396 taaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  43726637 taaataataggctaaattgcatttttggtcccttaactat 43726598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 43140690 - 43140728
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  43140690 aaaaaaaaggttaaattgcatttttagtcccttaactat 43140728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 32706730 - 32706762
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  32706730 taggctaaattgcatttttggtcccttaactat 32706762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 35085737 - 35085769
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  35085737 taggctaaattgcatttttggtcccttaactat 35085769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 395 - 435
Target Start/End: Original strand, 12593446 - 12593486
Alignment:
Q  395 ataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  12593446 ataaaaaataggctaaattgcatttttgatcccttaactat 12593486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 15267240 - 15267272
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||||    
T  15267240 taggttaaattgcatttttggtcccttaactat 15267272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 435
Target Start/End: Original strand, 7399072 - 7399107
Alignment:
Q  400 aaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||| ||||||||||||||||||||||||||||    
T  7399072 aaataggctaaattgcatttttggtcccttaactat 7399107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Original strand, 33699267 - 33699305
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  33699267 aaaaaataggctaaattgcatttatggtcccttaactat 33699305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 41860073 - 41860035
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  41860073 aaaaaaaaggttaaattgcatttttggtctcttaactat 41860035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Complemental strand, 3879405 - 3879368
Alignment:
Q  398 aaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  3879405 aaaaaaaggctaaattgcatttttggtcccttaactat 3879368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 5152613 - 5152646
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||||||||||||||||||||||||||||    
T  5152613 ataggctaaattgcatttttggtcccttaactat 5152646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 19615419 - 19615452
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||| |||||    
T  19615419 ataggttaaattgcatttttggtcccttgactat 19615452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 433
Target Start/End: Complemental strand, 31909317 - 31909288
Alignment:
Q  404 aggttaaattgcatttttggtcccttaact 433  Q
    ||||||||||||||||||||||||||||||    
T  31909317 aggttaaattgcatttttggtcccttaact 31909288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 36752290 - 36752257
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||||||||||||||||||||||||||||    
T  36752290 ataggctaaattgcatttttggtcccttaactat 36752257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 18514286 - 18514318
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  18514286 taggctaaattgcatttttggtcccttaactat 18514318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 19204942 - 19204974
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  19204942 taggctaaattgcatttttggtcccttaactat 19204974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 35263492 - 35263524
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  35263492 taggctaaattgcatttttggtcccttaactat 35263524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 12123084 - 12123120
Alignment:
Q  399 aaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||| ||||||||||||||||||||||||||||    
T  12123084 aaaataggctaaattgcatttttggtcccttaactat 12123120  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 41208399 - 41208431
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||||||    
T  41208399 taggttaaattgcatttttggtcccttaactat 41208431  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Original strand, 21918496 - 21918527
Alignment:
Q  404 aggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||    
T  21918496 aggttaaattgcatttttggtcccttaactat 21918527  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Complemental strand, 35580336 - 35580305
Alignment:
Q  404 aggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||    
T  35580336 aggttaaattgcatttttggtcccttaactat 35580305  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Original strand, 40410711 - 40410742
Alignment:
Q  404 aggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||    
T  40410711 aggttaaattgcatttttggtcccttaactat 40410742  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 8846470 - 8846432
Alignment:
Q  397 aaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  8846470 aaaaaattggctaaattgcatttttggtcccttaactat 8846432  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 4846985 - 4846952
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    ||||| ||||||||||||||||||||||||||||    
T  4846985 ataggctaaattgcatttttggtcccttaactat 4846952  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 5348576 - 5348609
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||| |||||||||||||    
T  5348576 ataggttaaattgcatttttagtcccttaactat 5348609  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 435
Target Start/End: Original strand, 9028184 - 9028221
Alignment:
Q  398 aaaaataggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  9028184 aaaaataggctaaattacatttttggtcccttaactat 9028221  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 12123468 - 12123435
Alignment:
Q  402 ataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||| |||||||||||||||||||||    
T  12123468 ataggttaaatttcatttttggtcccttaactat 12123435  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 435
Target Start/End: Original strand, 45871686 - 45871727
Alignment:
Q  394 aataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||| |||| ||| ||||||||||||||||||||||||||||    
T  45871686 aatataaaaaaggctaaattgcatttttggtcccttaactat 45871727  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 2078868 - 2078828
Alignment:
Q  395 ataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||||||| ||||||||||| |||||| |||||||||||||    
T  2078868 ataaaaaaaaggttaaattgtatttttagtcccttaactat 2078828  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 431
Target Start/End: Original strand, 34521260 - 34521292
Alignment:
Q  399 aaaataggttaaattgcatttttggtcccttaa 431  Q
    |||||||| ||||||||||||||||||||||||    
T  34521260 aaaataggctaaattgcatttttggtcccttaa 34521292  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 435
Target Start/End: Complemental strand, 34521641 - 34521613
Alignment:
Q  407 ttaaattgcatttttggtcccttaactat 435  Q
    |||||||||||||||||||||||||||||    
T  34521641 ttaaattgcatttttggtcccttaactat 34521613  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 46767010 - 46766970
Alignment:
Q  395 ataaaaaataggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||| ||||||| ||||||||||||||||||||    
T  46767010 ataataaataggctaaattgtatttttggtcccttaactat 46766970  T

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Target: scaffold0809 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Original strand, 4337 - 4368
Alignment:
Q  404 aggttaaattgcatttttggtcccttaactat 435  Q
    ||||||||||||||||||||||||||||||||    
T  4337 aggttaaattgcatttttggtcccttaactat 4368  T

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Target: scaffold0809; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 4706 - 4674
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  4706 taggctaaattgcatttttggtcccttaactat 4674  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 435
Target Start/End: Original strand, 11486 - 11518
Alignment:
Q  403 taggttaaattgcatttttggtcccttaactat 435  Q
    |||| ||||||||||||||||||||||||||||    
T  11486 taggctaaattgcatttttggtcccttaactat 11518  T

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