View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3014_low_5 (Length: 296)

Name: NF3014_low_5
Description: NF3014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3014_low_5
NF3014_low_5
[»] chr1 (3 HSPs)
chr1 (92-281)||(5503158-5503344)
chr1 (34-66)||(1859460-1859492)
chr1 (34-66)||(52146783-52146815)
[»] chr5 (6 HSPs)
chr5 (34-65)||(10649991-10650022)
chr5 (34-66)||(9426676-9426708)
chr5 (34-66)||(13016487-13016519)
chr5 (34-66)||(13087865-13087897)
chr5 (34-66)||(13597982-13598014)
chr5 (34-66)||(20369228-20369260)
[»] chr8 (4 HSPs)
chr8 (34-66)||(886570-886602)
chr8 (34-66)||(2796992-2797024)
chr8 (34-66)||(32231842-32231874)
chr8 (34-66)||(33743728-33743760)
[»] chr7 (2 HSPs)
chr7 (34-66)||(32345553-32345585)
chr7 (34-66)||(40023848-40023880)
[»] chr6 (1 HSPs)
chr6 (34-66)||(4552855-4552887)
[»] chr4 (4 HSPs)
chr4 (34-66)||(36047223-36047255)
chr4 (34-66)||(38319864-38319896)
chr4 (34-66)||(42738454-42738486)
chr4 (34-66)||(49218905-49218937)
[»] chr3 (2 HSPs)
chr3 (34-66)||(26479952-26479984)
chr3 (34-66)||(36790995-36791027)
[»] chr2 (2 HSPs)
chr2 (34-66)||(11842488-11842520)
chr2 (34-66)||(43427485-43427517)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 92 - 281
Target Start/End: Complemental strand, 5503344 - 5503158
Alignment:
Q  92 aaatgacttagttattatgggacggaaggaataaccaattagaaagatcggagtgataggaaatgtgtccttcttgaacaccaatccatcggagatgcaa 191  Q
    |||||||| |||||||||| |||||||||||||||| |||| ||| ||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  5503344 aaatgactcagttattatgagacggaaggaataacccattaaaaatatcggagtgataggaaatgtgtcctt---gaacaccaatccatcggagatgcaa 5503248  T
Q  192 actagggtcctacaaacaattcgacactcaagtcggtaagagaacaagagtgaataaacctattaaaaggatggaagttgtgtactttgt 281  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5503247 actagggtcctacaaacatttcgacactcaagtcggtaagagaacaagagtgaataaacctattaaaaggatggaagttgtgtactttgt 5503158  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 1859492 - 1859460
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  1859492 attaatattgtattgaaaagtgaaatgagtcaa 1859460  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 52146783 - 52146815
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  52146783 attaatattgtattgaaaagttaaatgagtcaa 52146815  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 10650022 - 10649991
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtca 65  Q
    ||||||||||||||||||||||||||||||||    
T  10650022 attaatattgtattgaaaagtaaaatgagtca 10649991  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 9426676 - 9426708
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  9426676 attaatattgtattgaaaagtgaaatgagtcaa 9426708  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 13016487 - 13016519
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  13016487 attaatattgtattgaaaagtgaaatgagtcaa 13016519  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 13087865 - 13087897
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  13087865 attaatattgtattgaaaagtgaaatgagtcaa 13087897  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 13598014 - 13597982
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  13598014 attaatattgtattgaaaagtgaaatgagtcaa 13597982  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 20369260 - 20369228
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  20369260 attaatattgtattgaaaagtgaaatgagtcaa 20369228  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 886570 - 886602
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  886570 attaatattgtattgaaaagtgaaatgagtcaa 886602  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 2797024 - 2796992
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  2797024 attaatattgtattgaaaagtgaaatgagtcaa 2796992  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 32231842 - 32231874
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  32231842 attaatattgtattgaaaagtgaaatgagtcaa 32231874  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 33743760 - 33743728
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  33743760 attaatattgtattgaaaagttaaatgagtcaa 33743728  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 32345585 - 32345553
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  32345585 attaatattgtattgaaaagtcaaatgagtcaa 32345553  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 40023848 - 40023880
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  40023848 attaatattgtattgaaaagtgaaatgagtcaa 40023880  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 4552887 - 4552855
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  4552887 attaatattgtattgaaaagtgaaatgagtcaa 4552855  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 36047223 - 36047255
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  36047223 attaatattgtattgaaaagtgaaatgagtcaa 36047255  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 38319896 - 38319864
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  38319896 attaatattgtattgaaaagtgaaatgagtcaa 38319864  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 42738454 - 42738486
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  42738454 attaatattgtattgaaaagtgaaatgagtcaa 42738486  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 49218905 - 49218937
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  49218905 attaatattgtattgaaaagtgaaatgagtcaa 49218937  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 26479952 - 26479984
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||||||||| |||||    
T  26479952 attaatattgtattgaaaagtaaaatgggtcaa 26479984  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 36790995 - 36791027
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  36790995 attaatattgtattgaaaagtgaaatgagtcaa 36791027  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 11842520 - 11842488
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    |||||||||| ||||||||||||||||||||||    
T  11842520 attaatattgcattgaaaagtaaaatgagtcaa 11842488  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 43427485 - 43427517
Alignment:
Q  34 attaatattgtattgaaaagtaaaatgagtcaa 66  Q
    ||||||||||||||||||||| |||||||||||    
T  43427485 attaatattgtattgaaaagtgaaatgagtcaa 43427517  T

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