View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3014_low_9 (Length: 242)
Name: NF3014_low_9
Description: NF3014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3014_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 42422659 - 42422448
Alignment:
| Q |
13 |
cacagacatcaagaaaaagctcattaagatgggaattgatcccattactcatgaacctttgaataaacaagcatcatccaatgatagtagtacttcatcc |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42422659 |
cacacacatcaagaaaaagctcattaagatgggaattgatcccattactcatgaacctttgaataaacaagcatcatccaatgatagtagtacttcatcc |
42422560 |
T |
|
| Q |
113 |
cctgcagaaaatttgtcacagcctgtcaacaaccatgaagtgaaggaaactgatggggttgtcaattcagaggagaattcaagctcatccccagctgaaa |
212 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42422559 |
cctgcagaaaatttttcacagcctgtcaacaatcatgaagtgaaggaaactgatggggttgtcaattcagaggagaattcaagctcatccccagctgaaa |
42422460 |
T |
|
| Q |
213 |
attcttctggag |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42422459 |
attcttctggag |
42422448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University