View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3015_high_1 (Length: 698)
Name: NF3015_high_1
Description: NF3015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3015_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 19 - 685
Target Start/End: Complemental strand, 21123292 - 21122626
Alignment:
| Q |
19 |
cttcctacacctactccaatttcatacctcaacaaatcttctactgggatgtgatagtcttcaagaaacatacagcacatcagaaatatcagttctgctg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21123292 |
cttcctacacctactccaatttcatacctcaacaaatcttctactgggatgtgatagtcttcaagaaacatacagcacatcagaaatatctgttctgctt |
21123193 |
T |
|
| Q |
119 |
ctctattttgtaaacactcatagctggacttgatacaatttaaagcatcgctctctcctccttcatgatcatcagatgcctttgaaaccatcaacttaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21123192 |
ctctattttgtaaacactcatagctggacttgatacaatttaaagcatcgctctctcctccttcatgatcatcagatgcctttgaaaccatcaacttagc |
21123093 |
T |
|
| Q |
219 |
taatgttgaattccactcagtattatcctttccttttaaggaagaagacatagttttgattgctaagggaagtcccttgcattcatagcagatttcttgt |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21123092 |
taatgttgaattccactcattattatcctttccttttaaggaagaagacatagttttgattgctaagggaagtcccttgcattcatagcagatttcttgt |
21122993 |
T |
|
| Q |
319 |
ggtacaccatctaatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatct |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21122992 |
ggtacaccatctaatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatca |
21122893 |
T |
|
| Q |
419 |
tcttttgacaattcattaaattacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatccctgtatc |
518 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
21122892 |
tcttgtgacaattcattaaaatacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtataagcgaatccctgtatc |
21122793 |
T |
|
| Q |
519 |
cttcaaatgaaactctctccatagattgtcaactattataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactt |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21122792 |
cttcaaatgaaactctctccatagattgtcaactattataagagttctcttcatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactt |
21122693 |
T |
|
| Q |
619 |
tcttcccccaatttaaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttc |
685 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21122692 |
tcttcccccaatttcaagtttaacatatctgcaatttgtccttgaatgctcctaatgtttggagttc |
21122626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 268 - 684
Target Start/End: Complemental strand, 21115616 - 21115200
Alignment:
| Q |
268 |
atagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatctaatgacacagagaattcgtcatcaattactgcaagct |
367 |
Q |
| |
|
||||||||||||| |||||||||||| || || |||| ||||| ||| |||| |||||||| ||| || ||| |||||||||||||| ||||| || |
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|
| T |
21115616 |
atagttttgattgataagggaagtccattacactcattgcagacttcccgtggcacaccatccaataacttggagtattcgtcatcaattcttgcaaact |
21115517 |
T |
|
| Q |
368 |
tttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgtgtggttac |
467 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| | |||| | |||| |||| |||| |||| ||||||| |
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|
| T |
21115516 |
tttggaataatgtccaagattcatcttcagacaagagccccaaatgaatcttcttttgacagtccattgatgtacagacatgctcattacgagtggttat |
21115417 |
T |
|
| Q |
468 |
aaggattttcaatgcac-ctctattatcattgtttaagcgaatccctgtatccttcaaatgaaactctctccatagattgtcaactattataagagttct |
566 |
Q |
| |
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|||| ||| ||| ||| ||| |||||| || | |||||||| ||| |||||||||||||||||||||||| ||| |||||||||||| ||| |
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| T |
21115416 |
caggaccttccatgtgtgctcg-ttaacattgtctacgagaatccctatatttatcaaatgaaactctctccatagatcgtccactattataagaattcg |
21115318 |
T |
|
| Q |
567 |
ctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaatttaaagtttaacatatctgcaatttgtccttgaatg |
666 |
Q |
| |
|
||| ||| |||||||| |||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| || ||| |||||| |
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|
| T |
21115317 |
cttcttttgttttaaacacaaccataaacgttgtgctcttccctcttcactttcttcctccaatttcaagtttaacatatctgcaagttttccctgaatg |
21115218 |
T |
|
| Q |
667 |
ctcctaatgtttggagtt |
684 |
Q |
| |
|
| ||||| ||||||||| |
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|
| T |
21115217 |
cctctaatatttggagtt |
21115200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 231 - 666
Target Start/End: Original strand, 21715310 - 21715745
Alignment:
| Q |
231 |
ccactcagtattatcctttccttttaaggaagaagacatagttttgattgctaagggaagtcccttgcattcatagcagatttcttgtggtacaccatct |
330 |
Q |
| |
|
||||||| | |||| ||||||||||||| |||| | ||||||| || |||| ||| |||||||| |||| || ||||| |||| |||| |||||||| |
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|
| T |
21715310 |
ccactcacttttatgctttccttttaagcaagacgccatagttacaatagctaggggcagtcccttacatttatcgcagagttctcgtggcacaccatcc |
21715409 |
T |
|
| Q |
331 |
aatgacacagagaattcgtcatcaattactgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaat |
430 |
Q |
| |
|
| |||| || || | |||| ||| |||| |||||||||| || ||||||||||||||||| || |||||| ||| ||||| ||||||||||| | |
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|
| T |
21715410 |
attgacttggaaaacttgtcagtaatctttgcatgcttttggaacaaagtccaggattcatctttagataagagcgccaggtgaatattcttttgacagt |
21715509 |
T |
|
| Q |
431 |
tcattaaattacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatccctgtatccttcaaatgaaa |
530 |
Q |
| |
|
||||||| | || || | || | |||| |||||||||||||||||| |||| || | ||| |||||| || | |||||||| ||| | |||||| ||| |
|
|
| T |
21715510 |
ccattaaagtgcatacttgctgattacgagtggttacaaggattttccatgcgcccttgttaacattgtctatgtgaatccctatattcatcaaattaaa |
21715609 |
T |
|
| Q |
531 |
ctctctccatagattgtcaactattataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccatcttcactttcttcccccaat |
630 |
Q |
| |
|
|||| |||||| || |||| ||| | |||| ||| || ||||||| |||| |||||| | |||||||||||||| ||||| ||||||||| | | |
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|
| T |
21715610 |
ctctttccataaatcatcaattataacaagaattcgtttattttctttcaaactcaaccacaaccgttgtgctcttccctcttcgctttcttccttgagt |
21715709 |
T |
|
| Q |
631 |
ttaaagtttaacatatctgcaatttgtccttgaatg |
666 |
Q |
| |
|
|| ||||||||||| ||||| |||| |||||||||| |
|
|
| T |
21715710 |
ttcaagtttaacatgtctgccatttttccttgaatg |
21715745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 473
Target Start/End: Complemental strand, 21622576 - 21622463
Alignment:
| Q |
360 |
tgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgt |
459 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||| || || ||| | | |||||| ||||||||||| | |||| || | || || | || | |||| |
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| T |
21622576 |
tgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacga |
21622477 |
T |
|
| Q |
460 |
gtggttacaaggat |
473 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21622476 |
gtggttacaaggat |
21622463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 473
Target Start/End: Complemental strand, 21644290 - 21644177
Alignment:
| Q |
360 |
tgcaagcttttggaagaatgtccaggattcatctttggacaagagccccaaatgaatcttcttttgacaattcattaaattacaaacattctcaatacgt |
459 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||||| || || ||| | | |||||| ||||||||||| | |||| || | || || | || | |||| |
|
|
| T |
21644290 |
tgcatgcttttggaacaaagtccaggattcatctttagataaaagctctagatgaatattcttttgacagtccattgaagtgcatacttgctgattacga |
21644191 |
T |
|
| Q |
460 |
gtggttacaaggat |
473 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21644190 |
gtggttacaaggat |
21644177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 411 - 665
Target Start/End: Original strand, 23010392 - 23010646
Alignment:
| Q |
411 |
atgaatcttcttttgacaattcattaaattacaaacattctcaatacgtgtggttacaaggattttcaatgcacctctattatcattgtttaagcgaatc |
510 |
Q |
| |
|
|||||||||||||||||| | ||| | || ||| |||| | | |||| |||||| ||||||| ||| ||||||| | |||||||||| |||||||||| |
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|
| T |
23010392 |
atgaatcttcttttgacagtgcatcagatcacatacatgttgattacgagtggttgcaaggatcttccatgcacccttgttatcattgtctaagcgaatc |
23010491 |
T |
|
| Q |
511 |
cctgtatccttcaaatgaaactctctccatagattgtcaactattataagagttctctttatttcttttaaacgcaaccatagacgttgtgctcttccat |
610 |
Q |
| |
|
||| ||| ||||||| |||||||||||||| || || ||||||| ||| | | ||| ||||||| |||| |||||| | ||||||||||||||| | |
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|
| T |
23010492 |
cctacatcgttcaaatcaaactctctccataaatcatctactattacgagaatccgcttcttttctttcaaactcaaccacaaacgttgtgctcttccct |
23010591 |
T |
|
| Q |
611 |
cttcactttcttcccccaatttaaagtttaacatatctgcaatttgtccttgaat |
665 |
Q |
| |
|
| |||||||||||| ||||||| | ||| || | ||| || |||| ||||||||| |
|
|
| T |
23010592 |
catcactttcttcctccaatttcatgttcaaaacatcagctatttttccttgaat |
23010646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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