View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3015_high_2 (Length: 340)
Name: NF3015_high_2
Description: NF3015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3015_high_2 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 9588643 - 9588972
Alignment:
| Q |
11 |
cagagaaatcaaaacaagtaaaaaatgattaaaaattatattgtcttatatatctttagctattccatatattgctcaaaaatggttataatcaaataac |
110 |
Q |
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| T |
9588643 |
cagaaaaattaaaacaagtaaaacatgattaaaaattatattgtcttatatatctttagctattccatacattgctcaaaaatggtta--atcaaataac |
9588740 |
T |
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| Q |
111 |
atttttcatataaaaaactcattctagtgtcttttgtttaaaaattgtcat--gtgtcgagacaattttagaattcaattcatatacagttagtgtaaaa |
208 |
Q |
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| T |
9588741 |
atttttcatataaaaaactcattctagtgttttttgtttaaaaattgtcatatgtgtcgagacaattttagaattcaattcatatatagtgagtgtaaaa |
9588840 |
T |
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| Q |
209 |
tattttacattatcaaccaattacgaccttcgaatcattagaaacatttaacatttatcaaattttggatggacaaaaattattattgtactgctgccat |
308 |
Q |
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| T |
9588841 |
tattttacattgtcaaccaattactaccttcgaatcattagaaacatttaacatttatcaaattttggatggacaaaaattattattgtactgctgccat |
9588940 |
T |
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| Q |
309 |
gatagcaacagagatggaaagttgggggctgc |
340 |
Q |
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| T |
9588941 |
gatagcaacagagatggaaagttgggggctgc |
9588972 |
T |
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