View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3015_low_11 (Length: 204)
Name: NF3015_low_11
Description: NF3015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3015_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 4913999 - 4913829
Alignment:
| Q |
19 |
agaatctgcaggaacttgacctcagcagaaatggaatgagtggttattttcctcaatgccttagaaacttgacaagcctcagagtacttgatttatcctc |
118 |
Q |
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| T |
4913999 |
agaatctgcaggaacttgacctcagcagaaatggaatgagtggttattttcctcaatgccttagaaacttgacaagcctcagagtacttgatttatcctc |
4913900 |
T |
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| Q |
119 |
aaataattttgttggaaacattccatctttcatcattagtctcaagtctcttgaatatctatctccctttg |
189 |
Q |
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| T |
4913899 |
aaataattttgttggaaacattccatctttcatcattagtctcaagtctcttgaatatctatctctctttg |
4913829 |
T |
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Target: chr8 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 27 - 189
Target Start/End: Complemental strand, 32747002 - 32746840
Alignment:
| Q |
27 |
caggaacttgacctcagcagaaatggaatgagtggttattttcctcaatgccttagaaacttgacaagcctcagagtacttgatttatcctcaaataatt |
126 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||| || |||||||| |||||||||| |||| |||||||||||||||||| ||||||| |
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| T |
32747002 |
caggaacttgacctcagcagaaatagaatgagtggtgattttccacattgccttagcaacttgacaaacctccaagtacttgatttatcctccaataatt |
32746903 |
T |
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| Q |
127 |
ttgttggaaacattccatctttcatcattagtctcaagtctcttgaatatctatctccctttg |
189 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
32746902 |
ttgttggaaatattccatctttcatcactagtctcaagtctcttgaatatctatctctctttg |
32746840 |
T |
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