View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3015_low_3 (Length: 322)
Name: NF3015_low_3
Description: NF3015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3015_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 42 - 309
Target Start/End: Complemental strand, 32966448 - 32966179
Alignment:
| Q |
42 |
attatttatttattttttgtattctgacaaaaagtctgtaactaacacattgaattagaaataaattagtgtagatttgaacgagtgaaaatcattaaca |
141 |
Q |
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| T |
32966448 |
attatttatttatttattgtattctgacaaaaaatctgtaactaacacattgaattagaaacaaactagtgtagatttgaacgagtgaaaatcattaaca |
32966349 |
T |
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| Q |
142 |
caatttcaatttagattaagcaacttcatagaagttagatgtccaggagaattatgaaggtaggagcaagaacaagagattattcaaaatttatctctct |
241 |
Q |
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| T |
32966348 |
caatttcaatttagattaaacaacttcatagatgttagatgtccaggagaattatgaaggtgggagcaagaacaagagattattctaaatttatctctct |
32966249 |
T |
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| Q |
242 |
ttctct--agagagagagattcaaattctacaaaaaacgaagcaaggagattatctcgcgtgttgaaaat |
309 |
Q |
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| T |
32966248 |
ttctctaaagagagagagattcaaattctacaaaaaacgaagcaaggagattatctcgcgtgttgaaaat |
32966179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 128 - 222
Target Start/End: Complemental strand, 16049977 - 16049883
Alignment:
| Q |
128 |
gaaaatcattaacacaatttcaatttagattaagcaacttcatagaagttagatgtccaggagaattatgaaggtaggagcaagaacaagagatt |
222 |
Q |
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| T |
16049977 |
gaaaatcattaacccattttcaatttagattaagtaactccatagatgttagatgtgcaggagaattacgaaggtgggagtaagaacaagagatt |
16049883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 30594042 - 30593965
Alignment:
| Q |
145 |
tttcaatttagattaagcaacttcatagaagttagatgtccaggagaattatgaaggtaggagcaagaacaagagatt |
222 |
Q |
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||||||||||||||||| |||| |||||| ||||||||||||||||||||| |||||| |||| |||||||||||||| |
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| T |
30594042 |
tttcaatttagattaagtaactccatagatgttagatgtccaggagaattacgaaggtgggagtaagaacaagagatt |
30593965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 35241127 - 35241217
Alignment:
| Q |
128 |
gaaaatcattaacacaatttcaatttagattaagcaacttcatagaagttagatgtccaggagaattatgaaggtaggagcaagaacaaga |
218 |
Q |
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||||||||||||| || ||||| ||||||||||| |||| |||||| ||||||||||||||||||||| |||||| ||| |||||||||| |
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| T |
35241127 |
gaaaatcattaacccattttcagtttagattaagtaactccatagatgttagatgtccaggagaattacgaaggtgagagtaagaacaaga |
35241217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 4108119 - 4108069
Alignment:
| Q |
42 |
attatttatttattttttgtattctgacaaaaagtctgtaactaacacatt |
92 |
Q |
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|||||||||||||||||| |||||||| |||| |||| |||||||||||| |
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| T |
4108119 |
attatttatttattttttctattctgatcaaaaatctgcaactaacacatt |
4108069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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