View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3015_low_4 (Length: 311)

Name: NF3015_low_4
Description: NF3015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3015_low_4
NF3015_low_4
[»] chr1 (1 HSPs)
chr1 (47-297)||(26247048-26247294)
[»] chr5 (1 HSPs)
chr5 (199-297)||(8715859-8715957)
[»] chr6 (1 HSPs)
chr6 (207-284)||(16389347-16389424)
[»] chr3 (1 HSPs)
chr3 (207-284)||(30911743-30911820)
[»] chr8 (1 HSPs)
chr8 (205-270)||(32519741-32519806)
[»] chr4 (1 HSPs)
chr4 (207-284)||(10129762-10129839)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 47 - 297
Target Start/End: Original strand, 26247048 - 26247294
Alignment:
Q  47 gctcttcagttgtttgttctctctctccctgggagtgatcttcacatggaacaaatatacaatgtcgagtgatatgaacaaggatatgggctccaatgaa 146  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  26247048 gctcttctgttgtttgttctctctctccctgggagtgatcttcacatggaacaaatatacaacgtcgagtgatatgaacaaggatatgggctgcaatgaa 26247147  T
Q  147 ttagggttaaagatcgggtccaatgagttaggtagggaggtccacatgaattatcattaaaagtggagtgactatgttgctattaagtgatgattcatta 246  Q
    ||||||| |||||||| |||||||||||||||    |||  |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26247148 ttagggtcaaagatcgagtccaatgagttagg----gagaaccacataaattatcattaaaagtggagtgactatgttgctattaagtggtgattcatta 26247243  T
Q  247 gtgctagaagattgatgactcactgacttgttaggaagaacatagaataat 297  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  26247244 gtgctagaagattgatgactcactagcttgttaggaagaacatagaataat 26247294  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 297
Target Start/End: Original strand, 8715859 - 8715957
Alignment:
Q  199 atcattaaaagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaagaacatagaataat 297  Q
    ||||||||||||||||||| ||| |||||||||||||  || | |||| | ||||||||||| ||||||  ||  ||||| |||||||  |||||||||    
T  8715859 atcattaaaagtggagtgattatattgctattaagtggcgactaattaattctagaagattggtgactcgttggtttgtttggaagaatctagaataat 8715957  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 16389424 - 16389347
Alignment:
Q  207 aagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaag 284  Q
    ||||||| |||||||||||| ||| |||  ||| |||||||| ||||||||||| |||||||||   |||||||||||    
T  16389424 aagtggaatgactatgttgccatttagtagtgactcattagttctagaagattggtgactcactagtttgttaggaag 16389347  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 30911820 - 30911743
Alignment:
Q  207 aagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaag 284  Q
    ||||||| |||||||||||| ||| |||  ||| |||||||| ||||||||||| |||||||||   |||||||||||    
T  30911820 aagtggaatgactatgttgccatttagtagtgactcattagttctagaagattggtgactcactagtttgttaggaag 30911743  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Complemental strand, 32519806 - 32519741
Alignment:
Q  205 aaaagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcact 270  Q
    |||||| || |||||||||||| ||| ||| |||| ||||| || ||||||||||| |||||||||    
T  32519806 aaaagttgaatgactatgttgccatttagtaatgactcattggttctagaagattggtgactcact 32519741  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 284
Target Start/End: Complemental strand, 10129839 - 10129762
Alignment:
Q  207 aagtggagtgactatgttgctattaagtgatgattcattagtgctagaagattgatgactcactgacttgttaggaag 284  Q
    ||||||| |||||||||| | ||| |||  ||| |||||||| ||||||||||| |||||||||   |||||||||||    
T  10129839 aagtggaatgactatgttaccatttagtagtgactcattagttctagaagattggtgactcactagtttgttaggaag 10129762  T

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