View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3015_low_5 (Length: 274)

Name: NF3015_low_5
Description: NF3015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3015_low_5
NF3015_low_5
[»] chr7 (4 HSPs)
chr7 (18-264)||(22313997-22314243)
chr7 (19-108)||(2867132-2867221)
chr7 (166-249)||(45506886-45506969)
chr7 (166-249)||(45512346-45512429)
[»] chr2 (1 HSPs)
chr2 (31-264)||(41491007-41491240)
[»] chr5 (1 HSPs)
chr5 (31-264)||(34207657-34207890)
[»] chr4 (2 HSPs)
chr4 (166-269)||(23858626-23858729)
chr4 (25-107)||(23858788-23858870)
[»] chr3 (3 HSPs)
chr3 (46-107)||(11591445-11591506)
chr3 (23-96)||(27488787-27488860)
chr3 (28-96)||(27477562-27477630)
[»] chr6 (1 HSPs)
chr6 (49-101)||(3814897-3814949)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 22314243 - 22313997
Alignment:
Q  18 gaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314243 gaacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgt 22314144  T
Q  118 gatcaagatccacgttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22314143 gatcaagatccacgttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtg 22314044  T
Q  218 gctggtgcaacccacctagacctcactttgatcttgctatgcctatg 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22314043 gctggtgcaacccacctagacctcactttgatcttgctatgcctatg 22313997  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 2867221 - 2867132
Alignment:
Q  19 aacctatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaa 108  Q
    ||||| || |||||||| ||||||  ||| ||||||||| | ||||| ||||||||||||||||| || |||||||| ||||||| ||||    
T  2867221 aacctttatagccaaggttatggaacaaatacagcagcattgagcactgcactattcaacaatggattgagttgtggtgcatgttatgaa 2867132  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 45506969 - 45506886
Alignment:
Q  166 actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgat 249  Q
    ||||| ||||| ||||| || ||||| ||||| |  |||| |||||||||||| ||||| || || ||||||||||||||||||    
T  45506969 actgccacaaatttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat 45506886  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 45512429 - 45512346
Alignment:
Q  166 actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgat 249  Q
    ||||| ||||| ||||| || ||||| ||||| |  |||| |||||||||||| ||||| || || ||||||||||||||||||    
T  45512429 actgccacaaatttttgtccaccaaactttgcactccctaatgacaatggtggttggtgtaatccccctagacctcactttgat 45512346  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 41491240 - 41491007
Alignment:
Q  31 caaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccac 130  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||||||||  ||||||||||  | ||||||||| | |||||||   | ||    |    
T  41491240 caaggttatggagttaacacagcagcattaagcacagcactattcaacaatggactaagttgtggttcttgttttgaattgaagtgtgcaaatgacaagc 41491141  T
Q  131 gttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaaccc 230  Q
      |||||| || |||| | ||| || || || ||||| || || |||||||| ||||| || |||||||||||||||||||||||||| ||||| |||||    
T  41491140 aatggtgtcactctggtagcccttccattttcatcacagctactaacttttgtcctcctaactttgctcaacctagtgacaatggtggttggtgtaaccc 41491041  T
Q  231 acctagacctcactttgatcttgctatgcctatg 264  Q
     ||| | ||||||||||||||||| |||||||||    
T  41491040 tcctcgtcctcactttgatcttgccatgcctatg 41491007  T

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Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 34207890 - 34207657
Alignment:
Q  31 caaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttgaactcaagtgtgatcaagatccac 130  Q
    ||||| ||||| || |||||||||||| |||||||||||||||||||||| || || ||||||||  | ||||||||  | ||||||    | |||||      
T  34207890 caaggttatggtgtgaacacagcagcattaagcacagcactattcaacaacggtttgagttgtggctcgtgttttgagttaaagtgttccaatgatccta 34207791  T
Q  131 gttggtgtaaccctggaaacccatcaatcttgatcactgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaaccc 230  Q
    |||||||  |||||||||  || ||||| ||  | ||||| ||||| ||||| || ||||||||||||||| | ||||| ||||| || ||||| |||||    
T  34207790 gttggtgccaccctggaagtccttcaatattagtaactgctacaaatttttgtccaccaaattttgctcaagcaagtgataatggaggttggtgtaaccc 34207691  T
Q  231 acctagacctcactttgatcttgctatgcctatg 264  Q
     ||  |||| ||||||||||||||||||||||||    
T  34207690 tccacgaccacactttgatcttgctatgcctatg 34207657  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 23858729 - 23858626
Alignment:
Q  166 actgcaacaaacttttgccctccaaattttgctcaacctagtgacaatggtggctggtgcaacccacctagacctcactttgatcttgctatgcctatgc 265  Q
    ||||| || |||||||| ||||| |||||||||||| | ||||| |||||||| ||||| ||||| ||| | ||||| |||||||||||||||||||||     
T  23858729 actgctactaacttttgtcctcctaattttgctcaagcaagtgataatggtggttggtgtaaccctcctcgtcctcattttgatcttgctatgcctatgt 23858630  T
Q  266 ttct 269  Q
    ||||    
T  23858629 ttct 23858626  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 23858870 - 23858788
Alignment:
Q  25 tacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttga 107  Q
    ||||| ||||| || ||||| |||||||||||| ||||||| ||  | ||||||||||| ||||| ||||| || ||||||||    
T  23858870 tacagtcaaggttacggagtgaacacagcagcattaagcactgctttgttcaacaatggtttaagctgtggtgcttgttttga 23858788  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 107
Target Start/End: Original strand, 11591445 - 11591506
Alignment:
Q  46 aacacagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatgttttga 107  Q
    |||||||| ||  ||||||| || |||||||||| ||| ||||| |||||||||||||||||    
T  11591445 aacacagctgctttaagcactgctctattcaacagtggattaagctgtggagcatgttttga 11591506  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 27488860 - 27488787
Alignment:
Q  23 tatacagccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtgga 96  Q
    |||| |||||||| ||||||   |||||||||||||||||||| ||  | ||||||||||| ||||| ||||||    
T  27488860 tatatagccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga 27488787  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 27477630 - 27477562
Alignment:
Q  28 agccaaggctatggagtaaacacagcagcactaagcacagcactattcaacaatggcttaagttgtgga 96  Q
    |||||||| ||||||   |||||||||||||||||||| ||  | ||||||||||| ||||| ||||||    
T  27477630 agccaaggatatggaaccaacacagcagcactaagcactgctttgttcaacaatggtttaagctgtgga 27477562  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 3814949 - 3814897
Alignment:
Q  49 acagcagcactaagcacagcactattcaacaatggcttaagttgtggagcatg 101  Q
    ||||||||||| ||||| ||| ||||||||||||| || |||||||| |||||    
T  3814949 acagcagcacttagcactgcattattcaacaatggtttgagttgtggtgcatg 3814897  T

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