View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3015_low_9 (Length: 231)

Name: NF3015_low_9
Description: NF3015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3015_low_9
NF3015_low_9
[»] chr5 (7 HSPs)
chr5 (13-210)||(42125378-42125575)
chr5 (13-216)||(41711808-41712011)
chr5 (13-214)||(42130603-42130804)
chr5 (24-210)||(42118787-42118974)
chr5 (14-212)||(34238883-34239081)
chr5 (14-212)||(34230828-34231038)
chr5 (83-209)||(41570045-41570171)
[»] chr2 (2 HSPs)
chr2 (13-216)||(12250199-12250402)
chr2 (125-170)||(32680908-32680953)
[»] chr6 (1 HSPs)
chr6 (14-216)||(25521044-25521246)
[»] chr3 (1 HSPs)
chr3 (13-209)||(8524833-8525029)
[»] chr4 (1 HSPs)
chr4 (13-216)||(11120152-11120355)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 42125378 - 42125575
Alignment:
Q  13 gagatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaat 112  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||| ||||||   |||     
T  42125378 gagatgaagtgattgtaatttggaaaggtgtgagatttgaattggaatttcacctttaaagaaactacgagacaagtcaagatgtgcaagactcataaac 42125477  T
Q  113 ccaccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggatg 210  Q
    ||||||||||| |||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  42125478 ccaccaaacttagaatgaaaatgagagtaagagaaatcattgttagaaaggttgagtgtttgaagatgaacaagattgaaaagggtactgttaggatg 42125575  T

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Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 41712011 - 41711808
Alignment:
Q  13 gagatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaat 112  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||  |||| ||||||||||| ||||||  ||||     
T  41712011 gagatgaagtgattgtaatttggagaggtgtgagatttgaattggaatttcaccttcaaagtaactataagacatgtcaagatgtgcaagactcaaaaac 41711912  T
Q  113 ccaccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggatgga 212  Q
    | ||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  41711911 cgaccaaacttagaatgaaaatgggagtaagagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatggaaaagagtattattaggatgga 41711812  T
Q  213 atat 216  Q
    ||||    
T  41711811 atat 41711808  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 13 - 214
Target Start/End: Original strand, 42130603 - 42130804
Alignment:
Q  13 gagatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaat 112  Q
    |||||||||||||||||||||||| | ||| ||||||||| |||||||||||||||  |||  |||||  |||||||||||||||||||||||   ||||    
T  42130603 gagatgaagtgattgtaatttggataggtgagagatttgagttggaatttcaccttctaagttactatcagacaagtcaagatgtgtaagactctgaaat 42130702  T
Q  113 ccaccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggatgga 212  Q
    |||| ||||||  ||| |||||| |||| | |||||| ||||| |||||||||||||||||| |||||||||||||| ||||| ||||| ||||||| ||    
T  42130703 ccacaaaacttataatgaaaatgagagtcaaagaaatcattgtaagaaaggttgagtgtttggagatgaacaagatgaaaaagggtactattaggattga 42130802  T
Q  213 at 214  Q
    ||    
T  42130803 at 42130804  T

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Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 42118787 - 42118974
Alignment:
Q  24 attgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaag-aaactatttgacaagtcaagatgtgtaagacttgaaaatccaccaaact 122  Q
    ||||||||||||| | ||||||||||||| |||||||||||||||||||| |||||||  |||||||||||||||||||||||  |||| ||||||||||    
T  42118787 attgtaatttggataagtgtgagatttgagttggaatttcacctttaaagaaaactatgagacaagtcaagatgtgtaagactcaaaaaaccaccaaact 42118886  T
Q  123 tggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggatg 210  Q
    | |||| |||| | ||    ||||||||||||   | |||||| |||||||| |||||||||||||||||||| ||| ||||||||||    
T  42118887 tagaatgaaaacgagaagcggagaaattattggatgcaaggtttagtgtttggagatgaacaagatggaaaagggtattgttaggatg 42118974  T

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Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 34239081 - 34238883
Alignment:
Q  14 agatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaatc 113  Q
    ||||||||||||||||||||||||| || ||||||||||   |||||||||||   ||    | |||| ||||||||||||||||||||||| | ||| |    
T  34239081 agatgaagtgattgtaatttggaaaggtatgagatttgagaaggaatttcaccgccaacatgagtattagacaagtcaagatgtgtaagactcgtaaacc 34238982  T
Q  114 caccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggatgga 212  Q
      |||||||| |||||||||| |||   | |||||  |||||||||||||||||||||||| |||||||||| || |||||| ||||| ||||||||||    
T  34238981 tgccaaacttagaatcaaaataggaaccatagaaaccattgttagaaaggttgagtgtttggagatgaacaatattgaaaagggtactattaggatgga 34238883  T

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Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 34231038 - 34230828
Alignment:
Q  14 agatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaatc 113  Q
    ||||||||||||||||||||||||| ||  |||||||||   ||||||||| ||| |||||||| |   |||||||| ||||||||||||||   ||| |    
T  34231038 agatgaagtgattgtaatttggaaaggtccgagatttgagaaggaatttcatcttgaaagaaacaagaagacaagtcgagatgtgtaagactcataaacc 34230939  T
Q  114 caccaaacttggaatcaaaatggga------------gtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtact 201  Q
    | |||||||| |||| |||||||||            || |||||||| |||||| |||||||||||  ||||||| ||| ||||||||||||| |||||    
T  34230938 cgccaaacttagaatgaaaatgggagccagagaaatcgttagagaaataattgttcgaaaggttgagcatttgaaggtgagcaagatggaaaagggtact 34230839  T
Q  202 gttaggatgga 212  Q
     ||||||||||    
T  34230838 attaggatgga 34230828  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 209
Target Start/End: Complemental strand, 41570171 - 41570045
Alignment:
Q  83 gacaagtcaagatgtgtaagacttgaaaatccaccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaa 182  Q
    |||||||||||||||||||||||   ||||||||||||||  ||||  |||| |||||   |||||| ||||| |||||||||||||| ||| ||||||     
T  41570171 gacaagtcaagatgtgtaagactcttaaatccaccaaactgagaatgcaaattggagttgaagaaatcattgtgagaaaggttgagtgattggagatgag 41570072  T
Q  183 caagatggaaaagagtactgttaggat 209  Q
    ||||||| ||||||||  |||||||||    
T  41570071 caagatgaaaaagagtgttgttaggat 41570045  T

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Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 12250199 - 12250402
Alignment:
Q  13 gagatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaat 112  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| |  | |||    
T  12250199 gagatgaagtgattctaatttggaaaggtgtgagatttgagttggaacttcacctttaaagaaactattagacaagtcaagatgtgtaagattaaagaat 12250298  T
Q  113 ccaccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggatgga 212  Q
    ||||||||||| |||| |||||||||||  ||||||| ||||  |||||||||||||||||| |||||| |||||| |||||| ||||| ||||| || |    
T  12250299 ccaccaaacttagaatgaaaatgggagtttgagaaatcattggaagaaaggttgagtgtttggagatgagcaagatcgaaaagggtactattaggttgta 12250398  T
Q  213 atat 216  Q
    ||||    
T  12250399 atat 12250402  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 32680953 - 32680908
Alignment:
Q  125 gaatcaaaatgggagtaagagaaattattgttagaaaggttgagtg 170  Q
    |||| |||||||||||||||||||| |||||||||||||| |||||    
T  32680953 gaatgaaaatgggagtaagagaaatgattgttagaaaggtcgagtg 32680908  T

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Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 25521246 - 25521044
Alignment:
Q  14 agatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaatc 113  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||   ||||||| |||||||||||||||   ||| |    
T  25521246 agatgaagtgattgtaatttggaaaggtgtgagatttgagttggaattttacctttaaagaaactaccagacaagtaaagatgtgtaagactctgaaacc 25521147  T
Q  114 caccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggatggaa 213  Q
    |||||||||| | || ||||||||||  || ||||| ||||| ||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||    
T  25521146 caccaaacttagcatgaaaatgggagccagtgaaatcattgtaagaaaggttgagtttttgaatatgagcaagatggaaaagagtactattaggatggaa 25521047  T
Q  214 tat 216  Q
    |||    
T  25521046 tat 25521044  T

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Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 8524833 - 8525029
Alignment:
Q  13 gagatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaat 112  Q
    |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| | ||||||  ||||||||||||||||| |||||  ||||     
T  8524833 gagatgaagtgattgtaatttgcaaaggtgtgagatttgagttggaatttcacctttaaggtaactatgagacaagtcaagatgtgtgagactcaaaaac 8524932  T
Q  113 ccaccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggat 209  Q
    ||||||||||| |||| |||||  |||  |||||||| |||||||| |||||||||| |||||| || | ||||||||||||| |||||||||||||    
T  8524933 ccaccaaactttgaatgaaaataagagccagagaaatcattgttagcaaggttgagtttttgaatataagcaagatggaaaagggtactgttaggat 8525029  T

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Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 11120152 - 11120355
Alignment:
Q  13 gagatgaagtgattgtaatttggaaatgtgtgagatttgaattggaatttcacctttaaagaaactatttgacaagtcaagatgtgtaagacttgaaaat 112  Q
    ||||| ||| ||||||||||||||||  | |||||||||| ||||||||||||| | || |  |||||  ||||||| |||||||||||||||   |||     
T  11120152 gagataaagggattgtaatttggaaagatatgagatttgagttggaatttcaccataaatgttactataagacaagtaaagatgtgtaagactctgaaac 11120251  T
Q  113 ccaccaaacttggaatcaaaatgggagtaagagaaattattgttagaaaggttgagtgtttgaagatgaacaagatggaaaagagtactgttaggatgga 212  Q
    ||||||||||| |||| |||| | |||   |||||||||||||    ||||||||||||||| |||||||||||||||||||| ||||| || ||||| |    
T  11120252 ccaccaaacttagaatgaaaacgagagccggagaaattattgtatacaaggttgagtgtttggagatgaacaagatggaaaagggtactattcggatgta 11120351  T
Q  213 atat 216  Q
    ||||    
T  11120352 atat 11120355  T

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