View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3016_high_10 (Length: 331)

Name: NF3016_high_10
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3016_high_10
NF3016_high_10
[»] chr3 (20 HSPs)
chr3 (18-316)||(46140344-46140642)
chr3 (25-253)||(42510151-42510376)
chr3 (119-253)||(21200561-21200695)
chr3 (23-193)||(36820156-36820326)
chr3 (58-253)||(39600816-39601013)
chr3 (119-229)||(41842670-41842780)
chr3 (25-250)||(50249298-50249531)
chr3 (247-316)||(55244444-55244513)
chr3 (65-184)||(3987004-3987125)
chr3 (24-162)||(26490233-26490371)
chr3 (122-226)||(39235154-39235258)
chr3 (120-224)||(45289255-45289359)
chr3 (119-162)||(44134056-44134099)
chr3 (77-253)||(54365110-54365287)
chr3 (99-177)||(50960844-50960922)
chr3 (122-175)||(49841635-49841688)
chr3 (25-183)||(54128295-54128455)
chr3 (23-183)||(27917487-27917647)
chr3 (39-111)||(38054616-38054688)
chr3 (260-320)||(42026579-42026639)
[»] chr7 (27 HSPs)
chr7 (24-192)||(36514403-36514571)
chr7 (24-191)||(5335838-5336005)
chr7 (24-177)||(30200174-30200325)
chr7 (30-253)||(47848596-47848821)
chr7 (79-230)||(19262592-19262742)
chr7 (132-230)||(6420648-6420746)
chr7 (23-235)||(39811872-39812086)
chr7 (23-193)||(42187386-42187557)
chr7 (24-183)||(33072870-33073029)
chr7 (99-226)||(36136757-36136884)
chr7 (78-253)||(38135348-38135521)
chr7 (23-186)||(14593676-14593845)
chr7 (77-253)||(27893686-27893859)
chr7 (120-253)||(28628068-28628201)
chr7 (58-183)||(43281626-43281751)
chr7 (99-227)||(43282401-43282528)
chr7 (99-252)||(27021831-27021981)
chr7 (123-193)||(12966039-12966109)
chr7 (23-97)||(24549980-24550054)
chr7 (119-253)||(26742031-26742165)
chr7 (33-184)||(48736103-48736256)
chr7 (132-253)||(48202837-48202958)
chr7 (119-183)||(7273052-7273116)
chr7 (23-71)||(16013199-16013247)
chr7 (123-227)||(25579238-25579342)
chr7 (77-193)||(28858015-28858131)
chr7 (122-230)||(41948532-41948640)
[»] chr1 (27 HSPs)
chr1 (99-253)||(2544592-2544745)
chr1 (106-253)||(13827705-13827852)
chr1 (23-253)||(9599529-9599761)
chr1 (60-254)||(43423671-43423867)
chr1 (119-193)||(32404721-32404795)
chr1 (25-187)||(1661343-1661511)
chr1 (119-230)||(5338737-5338848)
chr1 (78-184)||(39422247-39422353)
chr1 (24-184)||(40419555-40419717)
chr1 (119-220)||(48431574-48431675)
chr1 (119-227)||(40416384-40416492)
chr1 (119-185)||(13827920-13827986)
chr1 (103-184)||(8343062-8343143)
chr1 (121-230)||(35828708-35828817)
chr1 (23-176)||(9509233-9509388)
chr1 (117-185)||(10272270-10272338)
chr1 (23-175)||(18469295-18469447)
chr1 (253-320)||(17640110-17640177)
chr1 (24-183)||(1210661-1210822)
chr1 (61-171)||(17815427-17815537)
chr1 (99-209)||(51812518-51812628)
chr1 (127-192)||(10569263-10569328)
chr1 (99-144)||(16943168-16943213)
chr1 (249-304)||(37591163-37591215)
chr1 (148-193)||(52073657-52073702)
chr1 (105-177)||(7921834-7921906)
chr1 (58-158)||(37463103-37463203)
[»] chr2 (26 HSPs)
chr2 (25-111)||(42092436-42092522)
chr2 (24-192)||(9647805-9647971)
chr2 (24-253)||(38434867-38435099)
chr2 (58-221)||(9556536-9556700)
chr2 (101-252)||(12141539-12141690)
chr2 (118-225)||(41858743-41858850)
chr2 (77-253)||(43752082-43752260)
chr2 (86-180)||(9578911-9579005)
chr2 (23-175)||(4598775-4598931)
chr2 (122-193)||(13240940-13241011)
chr2 (57-184)||(18188731-18188858)
chr2 (58-183)||(12734651-12734776)
chr2 (23-103)||(7825273-7825353)
chr2 (126-224)||(3481161-3481259)
chr2 (247-320)||(42149703-42149776)
chr2 (24-183)||(41763247-41763407)
chr2 (60-143)||(7615251-7615334)
chr2 (253-316)||(37470180-37470243)
chr2 (136-191)||(42543265-42543320)
chr2 (99-192)||(11412714-11412807)
chr2 (247-283)||(12026085-12026121)
chr2 (132-184)||(12026209-12026261)
chr2 (119-186)||(14197364-14197432)
chr2 (25-193)||(23714456-23714623)
chr2 (25-193)||(24102128-24102295)
chr2 (138-230)||(43260436-43260528)
[»] chr4 (26 HSPs)
chr4 (23-184)||(17900395-17900558)
chr4 (29-193)||(54470128-54470294)
chr4 (58-188)||(51252661-51252791)
chr4 (25-230)||(33709836-33710048)
chr4 (119-207)||(42285881-42285969)
chr4 (119-191)||(35555844-35555916)
chr4 (99-191)||(41192829-41192921)
chr4 (23-184)||(31403222-31403387)
chr4 (25-158)||(49987345-49987480)
chr4 (24-97)||(20105764-20105837)
chr4 (24-186)||(44047550-44047714)
chr4 (93-193)||(50662374-50662475)
chr4 (58-183)||(51421682-51421807)
chr4 (121-253)||(29398833-29398965)
chr4 (119-175)||(42639233-42639289)
chr4 (24-176)||(48622755-48622907)
chr4 (24-183)||(28236101-28236260)
chr4 (132-186)||(8459237-8459291)
chr4 (58-179)||(10208988-10209107)
chr4 (24-183)||(31960019-31960180)
chr4 (136-230)||(46372054-46372148)
chr4 (119-189)||(50471539-50471609)
chr4 (78-156)||(10775654-10775734)
chr4 (78-179)||(25257790-25257891)
chr4 (247-283)||(6843781-6843817)
chr4 (119-191)||(31897625-31897697)
[»] chr5 (23 HSPs)
chr5 (23-194)||(10082933-10083105)
chr5 (119-253)||(42199299-42199433)
chr5 (31-193)||(21952274-21952444)
chr5 (99-193)||(4026530-4026624)
chr5 (30-192)||(32516480-32516642)
chr5 (78-184)||(33667188-33667294)
chr5 (99-193)||(79506-79600)
chr5 (119-229)||(43475253-43475363)
chr5 (23-176)||(31636132-31636281)
chr5 (119-253)||(7359395-7359528)
chr5 (25-158)||(11002653-11002786)
chr5 (122-230)||(43557985-43558093)
chr5 (58-253)||(6888943-6889140)
chr5 (121-230)||(1525659-1525768)
chr5 (58-186)||(2712898-2713024)
chr5 (148-209)||(23979988-23980049)
chr5 (73-193)||(30588418-30588536)
chr5 (99-158)||(14667756-14667815)
chr5 (119-186)||(14749320-14749387)
chr5 (249-304)||(35615451-35615506)
chr5 (24-183)||(2075679-2075840)
chr5 (132-230)||(21093778-21093876)
chr5 (117-158)||(12577078-12577119)
[»] chr8 (22 HSPs)
chr8 (60-253)||(5908594-5908793)
chr8 (23-193)||(30748374-30748544)
chr8 (28-172)||(13171865-13172011)
chr8 (40-179)||(32043522-32043663)
chr8 (25-229)||(16917101-16917306)
chr8 (78-253)||(41971913-41972087)
chr8 (99-253)||(29700269-29700423)
chr8 (58-182)||(45419189-45419313)
chr8 (119-186)||(9695644-9695711)
chr8 (73-227)||(33511325-33511476)
chr8 (86-158)||(42493536-42493608)
chr8 (101-253)||(45512630-45512782)
chr8 (123-230)||(36143382-36143489)
chr8 (89-184)||(38689521-38689616)
chr8 (58-230)||(44681197-44681371)
chr8 (247-316)||(79193-79262)
chr8 (253-305)||(3638391-3638443)
chr8 (31-103)||(10080192-10080264)
chr8 (247-283)||(11733913-11733949)
chr8 (78-146)||(25985491-25985559)
chr8 (169-253)||(38178395-38178479)
chr8 (102-162)||(41444552-41444612)
[»] scaffold0018 (1 HSPs)
scaffold0018 (83-230)||(44026-44171)
[»] chr6 (14 HSPs)
chr6 (23-179)||(33083973-33084131)
chr6 (86-230)||(14389326-14389469)
chr6 (119-254)||(9593842-9593975)
chr6 (38-146)||(6641651-6641761)
chr6 (24-175)||(10100072-10100223)
chr6 (119-184)||(24665823-24665888)
chr6 (148-221)||(25494017-25494090)
chr6 (24-158)||(7513621-7513752)
chr6 (247-302)||(1748006-1748061)
chr6 (119-184)||(6293590-6293655)
chr6 (78-158)||(21870303-21870381)
chr6 (154-230)||(547042-547118)
chr6 (99-179)||(10617441-10617520)
chr6 (23-103)||(33998291-33998371)
[»] scaffold0015 (1 HSPs)
scaffold0015 (247-320)||(66703-66777)
[»] scaffold0373 (1 HSPs)
scaffold0373 (247-283)||(2381-2417)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 46140344 - 46140642
Alignment:
Q  18 tctaccgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacat 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46140344 tctaccatagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacat 46140443  T
Q  118 gtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46140444 gtagtagaaaagacggtggaaactagactcaggtggtttggacatatagagagaagacctgtagattctgtagtaaaaatagcagatcagattgatgata 46140543  T
Q  218 gtcagatcactaggggaataggaaggcctagaaaaatctagagattaatgagattgatagaaatatagcttaagatagaacattatggagttgtttgat 316  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  46140544 gtcagatcactaggggaataggaagacctagaaaaatctagagattaatgagtttgatagaaatatagcttacgatagaacattatggagttgtttgat 46140642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 253
Target Start/End: Complemental strand, 42510376 - 42510151
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaa-ttgacaatattagtgagagttggggtaatacatgtagta 123  Q
    |||||||||||| |||||||| ||| |||| | ||||||||||| || ||| | |||||| |||| |||| ||| |||  ||||| ||  || | |||||    
T  42510376 tagcagagatgaggatgttgcattggatgtgtggtaagactagatgggataggtttagaaattgataatactagggag--ttgggatagcacctatagta 42510279  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcaga 223  Q
    |||||||  ||||||| ||| || ||||||||||||||| ||  |||||||||| |||||| | | ||||  | || ||||||||| || ||||||||||    
T  42510278 gaaaagatagtggaaaataggcttaggtggtttggacatgta--gagaagacctatagattttgtggtaaggagagtagatcagatggaggatagtcaga 42510181  T
Q  224 tcactaggggaataggaaggcctagaaaaa 253  Q
    ||||||| || | |||||| ||||||||||    
T  42510180 tcactagaggcaaaggaagacctagaaaaa 42510151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 253
Target Start/End: Original strand, 21200561 - 21200695
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||| || ||||||||| ||||||||||  |||||  | || |||||| || ||   |||    
T  21200561 tagtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgcagtaaggagagtagatcacatggagagtag 21200660  T
Q  219 tcagatcactaggggaataggaaggcctagaaaaa 253  Q
    ||| ||||||||||| | |||||| ||||||||||    
T  21200661 tcaaatcactagggggagaggaagacctagaaaaa 21200695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 36820326 - 36820156
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagt 122  Q
    ||||||| |||| | | |||||| ||| |||| | |||||||||||||  ||| |||||||| |||| | ||||| |||||||||||||  || | || |    
T  36820326 cgtagcaaagataaggttgttgcgttggatgtgtggtaagactagacgagataggattagaaatgacgacattagagagagttggggtagcacctatatt 36820227  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    || ||||| |||||||||||| || ||||||||| ||||| || ||||||||||  |||||| | ||||||    
T  36820226 agcaaagatggtggaaactaggcttaggtggtttagacatgtaaagagaagacccatagattatgtagtaa 36820156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 58 - 253
Target Start/End: Complemental strand, 39601013 - 39600816
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagag--ttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtt 155  Q
    ||||||||||| || ||| |||||||| |||||| ||||| |||||  |||||||| ||| | |||||||||||| ||||||||  |  || ||||||||    
T  39601013 gtaagactagatgggataagattagaaatgacaacattagagagagagttggggtagtacctatagtagaaaagatggtggaaaacaagcttaggtggtt 39600914  T
Q  156 tggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    | | ||| || |||||||||||||||||||| |||  |  | || ||||||||| || |||||||||||  | || || | |||||| ||||||||||    
T  39600913 ttggcatgtaaagagaagacctgtagattctgtagcgaggagagtagatcagatcgaggatagtcagattgcaagaggtagaggaagacctagaaaaa 39600816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 41842780 - 41842670
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| ||||||||| || || |||||||||||  || || |||||||| | ||||||||| ||||||  | || |||||| || || |||||    
T  41842780 tagtagaaaagatggtggaaaccagtcttaggtggtttgggtatgtagagagaagagcggtagattctgtagtaatgagagtagatcaaatggaggatag 41842681  T
Q  219 tcagatcacta 229  Q
    |||||||||||    
T  41842680 tcagatcacta 41842670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 50249298 - 50249531
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtata---tgattagaattgacaatattagtgagag--ttggggtaatacatgt 119  Q
    |||| |||||||||||||| | ||| |||| | ||| |||||||||  |||   ||||||||| ||| || ||||| |||||  ||||||||   | | |    
T  50249298 tagcggagatgatgatgtttcgttggatgtgtggtaggactagacgagataggatgattagaaatgataacattagagagagagttggggtagcgcgtat 50249397  T
Q  120 agtagaaaagacggtggaaactagactca---ggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgat 216  Q
    ||||||||||| ||||||||||||||| |   |||||||||| ||| || || |||||| |||||||||| ||||||  | || ||||||||| |  |||    
T  50249398 agtagaaaagatggtggaaactagacttaggtggtggtttgggcatgtagagtgaagacatgtagattctttagtaaggagagtagatcagatgggggat 50249497  T
Q  217 agtcagatcactaggggaataggaaggcctagaa 250  Q
    ||||| ||||| || || | |||||| |||||||    
T  50249498 agtcatatcaccagaggtagaggaagacctagaa 50249531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 55244444 - 55244513
Alignment:
Q  247 agaaaaatctagagattaatgagattgatagaaatatagcttaagatagaacattatggagttgtttgat 316  Q
    ||||||||||||||||||||||| | ||||||||||| |  || ||||||||||||||| || |||||||    
T  55244444 agaaaaatctagagattaatgagttggatagaaatatggtatatgatagaacattatggtgtcgtttgat 55244513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 3987004 - 3987125
Alignment:
Q  65 tagacggtatatgattagaattgacaatatt--agtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacat 162  Q
    ||||||| |||  ||||||| |||| |||||  || |||||||||||||  || | |||||||||||| ||| ||||||||||| |||||||||||  ||    
T  3987004 tagacgggatagaattagaaatgacgatattggagagagagttggggtatcacctatagtagaaaagatggtagaaactagacttaggtggtttgggaat 3987103  T
Q  163 atacagagaagacctgtagatt 184  Q
     || |||||||||  |||||||    
T  3987104 gtagagagaagactggtagatt 3987125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 26490233 - 26490371
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||| ||||||| |||||||| ||| |||  | ||||||| |||||| |||||||||| | ||||   |||||  ||||||| ||||  || | |||||    
T  26490233 gtagcggagatgaggatgttgcgttggatgagtggtaagacaagacgggatatgattagcaatgacgtcattagacagagttgaggtagcacctatagta 26490332  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacat 162  Q
    ||||||| ||| |||| ||| || |||||||||||||||    
T  26490333 gaaaagatggtagaaaataggcttaggtggtttggacat 26490371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 39235154 - 39235258
Alignment:
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtca 221  Q
    ||||||||| ||| |||| ||| || ||||||||||| ||| || |||||||||||||||||  | |||||  || || ||||||||| || || |||||    
T  39235154 tagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacctgtagatgttgtagtacgaagagtagatcagatggaggaaagtca 39235253  T
Q  222 gatca 226  Q
    |||||    
T  39235254 gatca 39235258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 224
Target Start/End: Complemental strand, 45289359 - 45289255
Alignment:
Q  120 agtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagt 219  Q
    ||||||||||| |||||||| ||| || ||||||||||| ||  || |||||| || |||||||| | |||||| || || ||||||||| || ||||||    
T  45289359 agtagaaaagatggtggaaaataggcttaggtggtttgggcacgtagagagaacacttgtagattttgtagtaagaagagtagatcagatggaggatagt 45289260  T
Q  220 cagat 224  Q
     ||||    
T  45289259 tagat 45289255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 44134099 - 44134056
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacat 162  Q
    |||||||||||| |||||||| |||||| |||||||||||||||    
T  44134099 tagtagaaaagatggtggaaaatagacttaggtggtttggacat 44134056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 253
Target Start/End: Complemental strand, 54365287 - 54365110
Alignment:
Q  77 gattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggaca--tatacagagaaga 174  Q
    |||||||| ||| |||||||| |||||||||||||  || | |||||||||| | || ||||| ||| || ||||||||||| ||  || | |||||| |    
T  54365287 gattagaaatgaaaatattagagagagttggggtagcacctatagtagaaaatatggcggaaaatag-cttaggtggtttgggcatgtagagagagaata 54365189  T
Q  175 cctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    ||||||||||||||  |||  | || |||||| ||  | |||||||||| ||| || || | |||||| ||||||||||    
T  54365188 cctgtagattctattataaggagagtagatcaaatgaaggatagtcagaccacgagaggcagaggaagacctagaaaaa 54365110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 50960922 - 50960844
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacct 177  Q
    |||||||||||||  || | |||||||||||| ||| |||| ||| || ||||||||||| ||| || |||||||||||    
T  50960922 gagagttggggtagcacctatagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacct 50960844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 49841635 - 49841688
Alignment:
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagac 175  Q
    ||||||||| ||||||||||||||| ||||||||||| | | || |||||||||    
T  49841635 tagaaaagatggtggaaactagactaaggtggtttgggcgtgtagagagaagac 49841688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 54128295 - 54128455
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagt--tggggtaatacatgtagt 122  Q
    |||||||||||| |||||||| ||  |||  | |||| ||||||||  ||| |||||  | |||||  ||||| ||||||  |||||||  || | ||||    
T  54128295 tagcagagatgaggatgttgcgtttgatgagtggtaaaactagacgcgataggattatgaatgacaccattagagagagtgttggggtagcacctatagt 54128394  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    |||||||| ||| |||| ||| || ||||||||||| ||| || ||| |||||||||||||    
T  54128395 agaaaagatggtagaaaataggcttaggtggtttgggcatgtagagaaaagacctgtagat 54128455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 27917487 - 27917647
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagt 122  Q
    |||||||||||||| |||||||  ||| |||  | ||||| |||||||  || ||||||| | ||||   ||||| || ||||||||||  || | ||||    
T  27917487 cgtagcagagatgaggatgttgtgttggatgagtggtaagcctagacgagatttgattaggaatgaccccattagagaaagttggggtagcacctatagt 27917586  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    |||||||| ||| | || ||| || || |||||||||||| || | ||||||| |||||||    
T  27917587 agaaaagatggtaggaaataggcttagatggtttggacatgtagaaagaagacttgtagat 27917647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 38054688 - 38054616
Alignment:
Q  39 atgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggta 111  Q
    ||||||| |||||||  | |||||||||||||| ||| |||||||| ||| || ||||| |||||||| ||||    
T  38054688 atgttgcgttgaatgggtggtaagactagacgggataggattagaaatgataacattagagagagttgaggta 38054616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 320
Target Start/End: Complemental strand, 42026639 - 42026579
Alignment:
Q  260 gattaatgagattgatagaaatatagcttaagatagaacattatggagttgtttgattcat 320  Q
    |||||||||| | ||||||||||| |  || ||||||||||||||| ||| ||||||||||    
T  42026639 gattaatgagttagatagaaatatggtatatgatagaacattatggcgttatttgattcat 42026579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 36514571 - 36514403
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||||||||||| |||||||| ||| |||| | ||||||||| |||| |||  |||||||  ||||| ||||| |||||||||||||  || | |||||    
T  36514571 gtagcagagatgaggatgttgcgttggatgtgtggtaagactaaacgggatagaattagaaaggacaacattagagagagttggggtagcacctatagta 36514472  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagta 192  Q
    ||||||| ||| ||||||||||| ||||||||||| ||| || ||||| ||| ||| |||||| |||||    
T  36514471 gaaaagatggtagaaactagacttaggtggtttgggcatgtagagagacgacttgtggattctgtagta 36514403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 5335838 - 5336005
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||||||||||| |||||||| |||||||| | |||||||||||| | ||   ||||||| ||| || ||||| |||||||||||||  |  | |||||    
T  5335838 gtagcagagatgaggatgttgcgttgaatgtgtggtaagactagacagaatgcaattagaaatgataacattagagagagttggggtagcatctatagta 5335937  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagt 191  Q
    | ||||| ||| ||||||||||| ||||||||||| |||||| |||||||| |||| |||||| ||||    
T  5335938 ggaaagatggtcgaaactagacttaggtggtttgggcatatagagagaagaactgtggattctgtagt 5336005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 30200325 - 30200174
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||||||||||| |||||||  ||| |||| | |||||| |||| || |||||||||||| |||||| ||||  ||||||| |||||| || | |||||    
T  30200325 gtagcagagatgaggatgttgtgttggatgtgtggtaagattagatgggatatgattagaaatgacaacatta--gagagttagggtaacacctatagta 30200228  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacct 177  Q
    ||||||| |||||||||||| || ||||| ||| | ||| || | |||||||||    
T  30200227 gaaaagatggtggaaactaggcttaggtgattttggcatgtaaatagaagacct 30200174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 253
Target Start/End: Original strand, 47848596 - 47848821
Alignment:
Q  30 gagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag--ttggggtaatacatgtagtagaaa 127  Q
    ||||||| |||||||  ||| |||| | |||||||||||||| ||| ||| |||| ||| || ||||| |||||  ||||||||   | | |||||||||    
T  47848596 gagatgaggatgttgtgttggatgtgtggtaagactagacgggataggatcagaagtgataacattagagagagagttggggtagcgcctatagtagaaa 47848695  T
Q  128 agacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcac 227  Q
    ||| |||||||| ||| || ||||||||||| ||| |  ||||||||| |||| ||||| || |||  | || ||||||||| || ||||||| ||||||    
T  47848696 agatggtggaaaataggcttaggtggtttgggcatgtcgagagaagacttgtaaattctgtactaaggagagtagatcagatggaggatagtctgatcac 47848795  T
Q  228 taggggaataggaaggcctagaaaaa 253  Q
    ||| || | ||||||  |||||||||    
T  47848796 tagaggcagaggaagaactagaaaaa 47848821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 230
Target Start/End: Complemental strand, 19262742 - 19262592
Alignment:
Q  79 ttagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctg 178  Q
    |||||| |||||||||||| |||||||||||||  || | | |||||||||| ||| |||||| | || ||||||||||  ||| || ||||||||||||    
T  19262742 ttagaaatgacaatattagagagagttggggtagcacctattgtagaaaagatggtagaaacttggcttaggtggtttgagcatgtagagagaagacctg 19262643  T
Q  179 tagattctatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    |||||| | |||||| || || ||||||||| ||   |||||| ||||||||    
T  19262642 tagatt-tgtagtaagaagagtagatcagatggagtgtagtcaaatcactag 19262592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Complemental strand, 6420746 - 6420648
Alignment:
Q  132 ggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    |||||||||||| || ||||||||||| ||| || ||||||||| ||||||| || ||||||  | || |||||||||  |||||||||||||||||||    
T  6420746 ggtggaaactaggcttaggtggtttgggcatgtagagagaagacttgtagatactgtagtaaggagagtagatcagatgaatgatagtcagatcactag 6420648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 235
Target Start/End: Original strand, 39811872 - 39812086
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatatt--agtgagagttggggtaatacatgta 120  Q
    |||||| || |||| |||||||||||| |||| | |||||||||||||  ||| |||||||| |||||| |||  || ||||||||||| |  || | |     
T  39811872 cgtagcggatatgaggatgttgctttggatgtgtggtaagactagacgtgataggattagaaatgacaacattagagagagagttggggcagcacctatc 39811971  T
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtc 220  Q
     ||||||| | |||| ||||| | || |||| |||||| ||| || ||||||||  |||||||||||||||||  | || ||||||||| || || || |    
T  39811972 atagaaaaaatggtgaaaactcggcttaggtagtttgggcatgtagagagaagagatgtagattctatagtaaggagagtagatcagatggaggaaagcc 39812071  T
Q  221 agatcactaggggaa 235  Q
    | |||||||| ||||    
T  39812072 aaatcactagaggaa 39812086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 42187386 - 42187557
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagt--gagagttggggtaatacatgta 120  Q
    |||||| ||||||| |||||||  ||| |||| | |||||||||||||| |||| ||||||| || ||  |||||   |||||| ||||||  || | ||    
T  42187386 cgtagcggagatgaggatgttgtgttggatgtgtagtaagactagacgggatat-attagaaatggcagcattagaaagagagtcggggtagcacctata 42187484  T
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
     ||||||||| |||||||| ||| || ||||||||||| ||| || ||||||| |||||||||| | ||||||    
T  42187485 atagaaaagatggtggaaaataggcttaggtggtttgggcatgtaaagagaaggcctgtagattatgtagtaa 42187557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 33072870 - 33073029
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    |||||||||||||||||||||| ||| |||  | ||||||||||||   ||| |||||| | |||||  ||||| |||||| ||||||  || | |||||    
T  33072870 gtagcagagatgatgatgttgcgttggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagtgggggtagcacctatagta 33072969  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    ||||||  ||| |||| ||| || || || ||||| ||| || |||||||||| ||||||    
T  33072970 gaaaagttggtagaaaataggcttagatgatttgggcatgtagagagaagacccgtagat 33073029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 36136757 - 36136884
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaata 198  Q
    |||||||||||||  || | |||||||||||| ||| |||| ||| || |||| |||||| |||||| |||||| |||| |||||  | |||||  || |    
T  36136757 gagagttggggtagcacctatagtagaaaagatggtagaaaatagtcttaggttgtttgggcatatagagagaatacctatagatgttgtagtacgaaga 36136856  T
Q  199 gcagatcagattgatgatagtcagatca 226  Q
    ||||||||||| || || ||||||||||    
T  36136857 gcagatcagatggaggagagtcagatca 36136884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 253
Target Start/End: Complemental strand, 38135521 - 38135348
Alignment:
Q  78 attagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacct 177  Q
    ||||||| |||||||||||| |||||||||| ||  |    |||| ||||||| |||||||| ||| || ||||||||||||||| || | ||||||||     
T  38135521 attagaaatgacaatattagcgagagttgggttagcaacgctagt-gaaaagatggtggaaaataggcttaggtggtttggacatgtagacagaagacca 38135423  T
Q  178 gtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    ||||||| | ||||||  | |  ||||||||| || ||||||||||||| ||| || | | |||| ||||||||||    
T  38135422 gtagattttgtagtaaggaga-tagatcagatggaggatagtcagatcattagaggcagatgaagacctagaaaaa 38135348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 14593676 - 14593845
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtga------gagttggggtaataca 116  Q
    |||||||||||||| |||||||| ||| |||| | |||||||||||||| |    ||||||| |||||| ||||| ||      ||| |||||| | ||     
T  14593676 cgtagcagagatgaggatgttgcgttggatgtgtggtaagactagacggaaccgaattagaaatgacaacattagagagagagtgagctggggtgacacc 14593775  T
Q  117 tgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattct 186  Q
    | |||||||||| | ||| ||||||||||| ||||| ||||| ||| ||  |||||||||||| ||||||    
T  14593776 tatagtagaaaaaatggtagaaactagacttaggtgatttgggcatgtagtgagaagacctgtggattct 14593845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 253
Target Start/End: Complemental strand, 27893859 - 27893686
Alignment:
Q  77 gattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacc 176  Q
    ||||||||  ||||||||||| |||||||| ||||| || | |||||||| ||| |||||||| ||| || |||||||||| |||| || |   |||| |    
T  27893859 gattagaaacgacaatattagagagagttgaggtaacacctatagtagaatagatggtggaaaataggcttaggtggtttgaacatgtaga---aagatc 27893763  T
Q  177 tgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    |||||||| | || | |  | || ||||||||| || |||| |||||||||||| |  | |||||| ||||||||||    
T  27893762 tgtagattttgtacttaggagagtagatcagatggaggatattcagatcactagagatagaggaagtcctagaaaaa 27893686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 253
Target Start/End: Complemental strand, 28628201 - 28628068
Alignment:
Q  120 agtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagt 219  Q
    |||||||| || |||||||| | | || ||||||||||| ||| || |||||| ||||||||||| | ||||||  | || ||||| ||| || ||||||    
T  28628201 agtagaaatgatggtggaaaattggcttaggtggtttgggcatgtaaagagaaaacctgtagattatgtagtaaggagagtagatccgatggaggatagt 28628102  T
Q  220 cagatcactaggggaataggaaggcctagaaaaa 253  Q
    || ||||| || || | |||||| ||||||||||    
T  28628101 caaatcacaagaggtagaggaagacctagaaaaa 28628068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 43281626 - 43281751
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    ||||||||||||  |||| |||||| | |||||  ||||| |||||| ||||||  || | |||||||||||  ||| |||| ||| || || |||||||    
T  43281626 gtaagactagacaatataggattaggaatgacaccattagagagagtgggggtagcacctatagtagaaaagttggtagaaaataggcttagatggtttg 43281725  T
Q  158 gacatatacagagaagacctgtagat 183  Q
    ||||| || |||||||||| ||||||    
T  43281726 gacatgtagagagaagacccgtagat 43281751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 43282401 - 43282528
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaata 198  Q
    |||||||||||||  || | ||||||||||| ||||||||||||| || |||||  |||| ||| || ||||||||| || ||||||| ||| ||  | |    
T  43282401 gagagttggggtagcacctatagtagaaaagtcggtggaaactaggcttaggtgaattgggcatgtagagagaagacttgcagattctgtaggaaggaga 43282500  T
Q  199 gcagatcagattgatgatagtcagatcac 227  Q
    | |||| |||| || ||||||||||||||    
T  43282501 gtagat-agatggaggatagtcagatcac 43282528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 27021981 - 27021831
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaata 198  Q
    |||||||||||||  || | |||||||||||  |||| ||||||| || ||||||||||| ||| || ||||||||  |   |||||||||||||  | |    
T  27021981 gagagttggggtagcacctatagtagaaaagttggtgaaaactaggcttaggtggtttgggcatgtagagagaagaaat---gattctatagtaaggaca 27021885  T
Q  199 gcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaa 252  Q
    | ||||| ||| |  ||||||||||||||||| || | |||| | |||||||||    
T  27021884 gtagatctgatgggggatagtcagatcactagaggtagaggaggacctagaaaa 27021831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 12966039 - 12966109
Alignment:
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    |||||||| |||||||||||  || ||||||||||| ||| || |||||||||| ||| ||||| ||||||    
T  12966039 agaaaagatggtggaaactatgcttaggtggtttgggcatgtagagagaagacccgtaaattctgtagtaa 12966109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 24550054 - 24549980
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattag 97  Q
    |||||||||||||| |||||||  ||| |||| |||||||||||||  | |||||||||||| ||| || |||||    
T  24550054 cgtagcagagatgaggatgttgtgttggatgtgttgtaagactagatagaatatgattagaaatgataacattag 24549980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 26742165 - 26742031
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| |||||||| |||  | |||||||||| |||| || ||| | ||||| |||||| | | ||||  | || ||||||||| ||  ||||    
T  26742165 tagtagaaaagatggtggaaaataggattaggtggtttgaacatgtagagaaacgacctatagattttgtggtaaggagagtagatcagatagagaatag 26742066  T
Q  219 tcagatcactaggggaataggaaggcctagaaaaa 253  Q
    |||||||||||| || | |||||| | ||||||||    
T  26742065 tcagatcactagaggcagaggaagacgtagaaaaa 26742031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 48736256 - 48736103
Alignment:
Q  33 atgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatatta--gtgagagttggggtaatacatgtagtagaaaaga 130  Q
    |||| |||||||| |||||||| | ||||||||||| |  |||  ||||||| |||| | ||||  | |||||||||||||  || |  |||||||||||    
T  48736256 atgaggatgttgcgttgaatgtgtggtaagactagatgagataaaattagaaatgacgacattatagagagagttggggtagcacctacagtagaaaaga 48736157  T
Q  131 cggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
     ||  ||||||||||| ||||||||||  ||| || || |||||||||| ||||    
T  48736156 tgggagaaactagacttaggtggtttgctcatgtagagcgaagacctgtggatt 48736103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 48202958 - 48202837
Alignment:
Q  132 ggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactagg 231  Q
    ||||||| |||| || ||||||||||  ||| || ||||||||| |||||||||| ||||||  | || |||||| || |  |||||||| |||| ||      
T  48202958 ggtggaatctaggcttaggtggtttgcgcatgtagagagaagacttgtagattctgtagtaaggagagtagatcatatggtggatagtcaaatcattata 48202859  T
Q  232 ggaataggaaggcctagaaaaa 253  Q
    || | |||||||||||||||||    
T  48202858 ggcagaggaaggcctagaaaaa 48202837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 7273052 - 7273116
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    |||||||||||  ||| |||| ||| || || |||||||| ||| ||||||||||||||||||||    
T  7273052 tagtagaaaagttggtagaaaataggcttagatggtttgggcatgtacagagaagacctgtagat 7273116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 16013199 - 16013247
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacgg 71  Q
    |||||||||||||| |||||||| ||| |||| | ||||||||||||||    
T  16013199 cgtagcagagatgaggatgttgcgttggatgtgtggtaagactagacgg 16013247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 227
Target Start/End: Complemental strand, 25579342 - 25579238
Alignment:
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcag 222  Q
    |||||| | |||||||| ||| || |||||||||||  || || ||||||||| |||||||||| | |||| || || |||| |||| || ||||||||     
T  25579342 agaaaaaatggtggaaaataggcttaggtggtttggggatgtagagagaagacatgtagattctgtggtaagaagagtagattagatggaggatagtcaa 25579243  T
Q  223 atcac 227  Q
    |||||    
T  25579242 atcac 25579238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 28858015 - 28858131
Alignment:
Q  77 gattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacc 176  Q
    |||||||| |||||| ||||||||||| ||||||   || | | |||||||| | ||| ||||||  | | ||||||||||| ||| || | ||| ||||    
T  28858015 gattagaaatgacaacattagtgagagatggggtggcacctattgtagaaaacatggtagaaactcaagttaggtggtttgggcatgtagaaagatgacc 28858114  T
Q  177 tgtagattctatagtaa 193  Q
    ||| |||||||||||||    
T  28858115 tgtggattctatagtaa 28858131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 41948532 - 41948640
Alignment:
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtca 221  Q
    ||||||||| |||||||||||| || | ||||||||| ||| || ||||||||||| | |||| | |||| || | ||  ||||||||||| | ||||||    
T  41948532 tagaaaagatggtggaaactaggcttaagtggtttgggcatgtagagagaagacctctggattatttagtgaagagagtggatcagattgaaggtagtca 41948631  T
Q  222 gatcactag 230  Q
     || |||||    
T  41948632 aattactag 41948640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 99 - 253
Target Start/End: Original strand, 2544592 - 2544745
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaata 198  Q
    |||||||||||||  || | |||||||||||| ||||||||  ||||| ||||||||||||||| || ||||||||||| |||||||||||||||  | |    
T  2544592 gagagttggggtagcacctatagtagaaaagatggtggaaaacagacttaggtggtttggacatgtagagagaagacctatagattctatagtaaggaga 2544691  T
Q  199 gcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    | ||||||||| || |||||||| | |||||| || | |||||| ||||||||||    
T  2544692 gtagatcagatggaggatagtca-aacactagaggtagaggaagacctagaaaaa 2544745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 106 - 253
Target Start/End: Complemental strand, 13827852 - 13827705
Alignment:
Q  106 ggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatc 205  Q
    |||||| ||| | |||||||||||||||||||||||||  | ||||||||||||||| || ||||||||  |||||||||| ||||||  | || |||||    
T  13827852 ggggtagtacctatagtagaaaagacggtggaaactagggtaaggtggtttggacatgtagagagaagaagtgtagattctgtagtaaggagagtagatc 13827753  T
Q  206 agattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    | || ||  |||||||||||||||| || | |||||| ||||||||||    
T  13827752 atatggaacatagtcagatcactagaggcagaggaagacctagaaaaa 13827705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 253
Target Start/End: Complemental strand, 9599761 - 9599529
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag--ttggggtaatacatgta 120  Q
    |||||||||||||| |||||||  ||| |||  | |||||||||||||| |||||||||| | |||||  ||||| |||||  |||| |||| || | ||    
T  9599761 cgtagcagagatgaggatgttgtgttggatgagtggtaagactagacgggatatgattaggaatgacatcattagagagagagttggagtaacacctata 9599662  T
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtc 220  Q
    |||||||||| ||| |||| ||| || |||||||| || |||||| | ||| |||||| ||||  ||||||| ||| || ||||||||| || || ||||    
T  9599661 gtagaaaagatggtagaaaataggcttaggtggttcgggcatataaatagatgacctgcagatgttatagtacaaagagtagatcagatggaggagagtc 9599562  T
Q  221 agatcactaggggaataggaaggcctagaaaaa 253  Q
    ||||||  || || | |||||| ||||||||||    
T  9599561 agatcataagaggtagaggaagacctagaaaaa 9599529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 254
Target Start/End: Original strand, 43423671 - 43423867
Alignment:
Q  60 aagactagacggtatatgattagaattgacaatattagtgaga--gttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    |||||||||| | ||| |||||||| |||| | ||||| ||||  |||||||||| || | |||||||||||| |||||||||||| || ||||||||||    
T  43423671 aagactagacaggataggattagaaatgaccacattagagagagagttggggtaacacctatagtagaaaagatggtggaaactaggcttaggtggtttg 43423770  T
Q  158 gacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaat 254  Q
    | ||| || ||||||||| |||||||| | ||||||  | || |||  |||| |||  |||||| |||||||| || | |||||| |||||||||||    
T  43423771 gccatgtagagagaagacttgtagattatgtagtaagtagagtagactagatggatagtagtcaaatcactagaggtagaggaagacctagaaaaat 43423867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Complemental strand, 32404795 - 32404721
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    ||||| |||||| |||||||| ||| || |||||||||||| || || |||||||||||||||||||||||||||    
T  32404795 tagtaaaaaagatggtggaaaataggcttaggtggtttggatatgtagagagaagacctgtagattctatagtaa 32404721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 1661343 - 1661511
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattga----caatatt--agtgagagttggggtaatacatg 118  Q
    |||||||||||| |||||||  |||||||| |  |||||||||| |  ||| |||||||| |||    |||||||  || |||||||||||||  || |     
T  1661343 tagcagagatgaagatgttgtgttgaatgtctgataagactagatgtgataggattagaaatgaatgacaatatttgagagagagttggggtagcaccta 1661442  T
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattcta 187  Q
    |||||||||||| |||||||| ||| ||||| |||||||  ||| || ||||||||||| |||||||||    
T  1661443 tagtagaaaagatggtggaaaataggctcagatggtttgagcatgtagagagaagacctatagattcta 1661511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 230
Target Start/End: Original strand, 5338737 - 5338848
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| ||||||||||   || ||||||||||| |||  | ||||||||||||||||| || ||||||  | || ||||||||| || ||||     
T  5338737 tagtagaaaagatggtggaaactgagcttaggtggtttgggcatgcagagagaagacctgtagatgctttagtaaggagagtagatcagatggaggatat 5338836  T
Q  219 tcagatcactag 230  Q
    ||||||||||||    
T  5338837 tcagatcactag 5338848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 39422353 - 39422247
Alignment:
Q  78 attagaattgacaatattagt-gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacc 176  Q
    ||||||| ||||||||||||  ||||||||| |||| |||| ||||||||||||  || ||||||||||| |||| | |||||||| || |||||||||     
T  39422353 attagaaatgacaatattagaagagagttggagtaacacatatagtagaaaagatagtagaaactagacttaggt-gcttggacatgtagagagaagaca 39422255  T
Q  177 tgtagatt 184  Q
    ||||||||    
T  39422254 tgtagatt 39422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 184
Target Start/End: Original strand, 40419555 - 40419717
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatatt--agtgagagttggggtaatacatgtag 121  Q
    ||||||||||||| |||| ||| |||||||||| |||| |||||| |  |||  ||||||| |||||| |||  || |||||||||||||  || | |||    
T  40419555 gtagcagagatgaggatggtgcgttgaatgtatggtaaaactagatgagatagaattagaaatgacaacattagagagagagttggggtagaacttatag 40419654  T
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
    ||||| ||| ||| | ||||||||| | ||||||||| ||| || ||||||||| ||| ||||    
T  40419655 tagaatagatggtagtaactagacttaagtggtttgggcatgtagagagaagacatgtggatt 40419717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 48431675 - 48431574
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| |||||||| ||| || ||||||||||| ||| || ||||||||| |||||||| | ||||||| | ||  |||||||| || |||||    
T  48431675 tagtagaaaagatggtggaaaataggcttaggtggtttgggcatgtagagagaagacttgtagattttgtagtaaagagagttgatcagatggaggatag 48431576  T
Q  219 tc 220  Q
    ||    
T  48431575 tc 48431574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 40416384 - 40416492
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| ||||||||| || || ||||||||| | ||| || |||||||| ||||||||| | ||||||  | || |||||||||  | |||||    
T  40416384 tagtagaaaagatggtggaaacgaggcttaggtggtttaggcatgtagagagaagaactgtagattttgtagtaaggagagtagatcagatgcaggatag 40416483  T
Q  219 tcagatcac 227  Q
    |||||||||    
T  40416484 tcagatcac 40416492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 13827986 - 13827920
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattc 185  Q
    |||||||||||| ||||||||||||  | |||||||||| |||| || |||||||||||||| ||||    
T  13827986 tagtagaaaagatggtggaaactagggttaggtggtttgaacatgtagagagaagacctgtatattc 13827920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 8343143 - 8343062
Alignment:
Q  103 gttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
    |||||||||| || | |||||||||||| |||||||||||| || ||||||  ||| ||| || ||||||||||||| ||||    
T  8343143 gttggggtaacacctttagtagaaaagatggtggaaactaggcttaggtggactgggcatgtagagagaagacctgtggatt 8343062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 230
Target Start/End: Complemental strand, 35828817 - 35828708
Alignment:
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtc 220  Q
    |||||||||| |||||||| |||  | ||||||||||||| | || ||||||||||| |||||| | ||||||  | || |||||| || || |||||||    
T  35828817 gtagaaaagatggtggaaaatagggttaggtggtttggacgtgtagagagaagacctatagattatgtagtaaggagagaagatcatatggaggatagtc 35828718  T
Q  221 agatcactag 230  Q
    ||||| ||||    
T  35828717 agatccctag 35828708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 9509233 - 9509388
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgaga--gttggggtaatacatgta 120  Q
    |||||||||||||| |||||||  ||| |||  |  ||||||||||| | |||||||||||| |||||  ||||| ||||  |||||||||  || | ||    
T  9509233 cgtagcagagatgaggatgttgtgttggatgagtgataagactagacaggatatgattagaaatgacaccattagagagagagttggggtagcacctata 9509332  T
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacc 176  Q
    |||||||||| |||  ||| ||| || |||| |||||| ||| || ||||||||||    
T  9509333 gtagaaaagatggtaaaaaataggcttaggtagtttgggcatgtagagagaagacc 9509388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 10272270 - 10272338
Alignment:
Q  117 tgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattc 185  Q
    |||||||||||||| ||| ||||||||||| | ||||||| | ||| || ||||||||||||| |||||    
T  10272270 tgtagtagaaaagatggtagaaactagactaaagtggttttggcatgtagagagaagacctgtggattc 10272338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 18469447 - 18469295
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagt 122  Q
    |||||| ||||||| |||| ||| ||| |||  | ||||||||||||   |||||||||| | |||||  ||||| |||||||||||||| || | ||||    
T  18469447 cgtagcggagatgacgatgctgcgttgtatgagtggtaagactagacatgatatgattaggaatgacacaattagagagagttggggtaacacctatagt 18469348  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagac 175  Q
    ||| |||| | | |||| |||  | |||| |||||||||||||  ||||||||    
T  18469347 agagaagatgatagaaaataggattaggtagtttggacatatagtgagaagac 18469295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 17640177 - 17640110
Alignment:
Q  253 atctagagattaatgagattgatagaaatatagcttaagatagaacattatggagttgtttgattcat 320  Q
    ||||||||||||||||| | |||| |||||| ||||   |||||||||||||| || |||||||||||    
T  17640177 atctagagattaatgagttggataaaaatattgcttgtaatagaacattatggcgtcgtttgattcat 17640110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 1210661 - 1210822
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatatt--agtgagagttggggtaatacatgtag 121  Q
    ||||||||||||| |||||||| ||| |||  | |||||||||||| | ||| |||||| | |||||  |||  || |||||| ||||||  || | |||    
T  1210661 gtagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatag 1210760  T
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    ||||||||  ||| |||| ||| || || |||||||| ||| || |||||||||| ||||||    
T  1210761 tagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacccgtagat 1210822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 17815427 - 17815537
Alignment:
Q  61 agactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggac 160  Q
    ||||||||||| |||  ||||||| |||||||||||| ||||| || ||||  || | || | ||||||| |||||||||||| || || |||||||| |    
T  17815427 agactagacgggatagcattagaaatgacaatattagagagagatgaggtaggacttataatggaaaagatggtggaaactaggcttagttggtttgggc 17815526  T
Q  161 atatacagaga 171  Q
    || || |||||    
T  17815527 atgtagagaga 17815537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 51812518 - 51812628
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaata 198  Q
    |||||||||||||| |  | |||||||||||| |||||||||||| || | ||| ||||| ||| || |||||| |  |||||||| | |||||| || |    
T  51812518 gagagttggggtaacaactatagtagaaaagatggtggaaactaggcttatgtgatttgggcatgtagagagaaaaattgtagattttgtagtaagaaaa 51812617  T
Q  199 gcagatcagat 209  Q
    | |||||||||    
T  51812618 gtagatcagat 51812628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 10569328 - 10569263
Alignment:
Q  127 aagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagta 192  Q
    |||| |||| ||||| | || ||||||||||| ||| || |||||||||||||||||||| |||||    
T  10569328 aagatggtgaaaacttggcttaggtggtttgggcatgtagagagaagacctgtagattctgtagta 10569263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 16943168 - 16943213
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactaga 144  Q
    ||||||||||||| ||| | |||||||||||| |||||||||||||    
T  16943168 gagagttggggtagtacctatagtagaaaagatggtggaaactaga 16943213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 37591163 - 37591215
Alignment:
Q  249 aaaaatctagagattaatgagattgatagaaatatagcttaagatagaacattatg 304  Q
    ||||||||||||||||||||| | |||||| |||||   |||||||||||||||||    
T  37591163 aaaaatctagagattaatgagttggatagagatata---taagatagaacattatg 37591215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 52073702 - 52073657
Alignment:
Q  148 aggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    ||||||||||||||| || ||||||||| | |||||||||||||||    
T  52073702 aggtggtttggacatgtagagagaagacatatagattctatagtaa 52073657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 7921834 - 7921906
Alignment:
Q  105 tggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacct 177  Q
    |||||||| || | |||||||||||| ||||||||||||  | | ||||||||||||| || |||||| ||||    
T  7921834 tggggtaaaacctatagtagaaaagatggtggaaactaggtttatgtggtttggacatgtagagagaatacct 7921906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 37463203 - 37463103
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    |||||||||||| |  || |||||| | |||||  ||||| |||||||||||||  || | ||||||||||||| || |||| ||| || ||||||||||    
T  37463203 gtaagactagacaggttaggattaggaatgacaccattagagagagttggggtagcacctatagtagaaaagacagtagaaaataggcttaggtggtttg 37463104  T
Q  158 g 158  Q
    |    
T  37463103 g 37463103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 42092436 - 42092522
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggta 111  Q
    ||||||||||||||||||||| ||| |||| | |||||||||||||| |||||||||||| ||||||| |||| |||||||||||||    
T  42092436 tagcagagatgatgatgttgcattggatgtgtagtaagactagacgggatatgattagaaatgacaatgttagagagagttggggta 42092522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 9647971 - 9647805
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||||||||||| |||||||| ||| |||| | ||||||||||| |  ||| |||||||| || ||| ||||   |||||||||| | ||| | |||||    
T  9647971 gtagcagagatgaggatgttgcgttggatgtgtggtaagactagatgtgataagattagaaatgtcaacattat--agagttggggcagtacctatagta 9647874  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagta 192  Q
    |||| || ||||||||||||  | ||||||||||||||| || | |||||||||||||||||| |||||    
T  9647873 gaaatgatggtggaaactagctttaggtggtttggacatgtaaaaagaagacctgtagattctctagta 9647805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 253
Target Start/End: Original strand, 38434867 - 38435099
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag--ttggggtaatacatgtag 121  Q
    ||||| ||||||| |||||||| ||| |||  | |||| ||||||||  | | |||||||| |||||| ||||| |||||  ||||||||  || | |||    
T  38434867 gtagcggagatgaggatgttgcattggatgcgtggtaaaactagacgagagaagattagaaatgacaacattagagagagaattggggtagcacctatag 38434966  T
Q  122 tagaaaagacggtggaaactagactcagg-tggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtc 220  Q
    ||||||||| |||||||||||||||  || |||||||| ||| || ||||||||| ||||||| || ||||||  | || |||||| || || |||||||    
T  38434967 tagaaaagatggtggaaactagactttgggtggtttgggcatgtaaagagaagacttgtagatgctttagtaaggagagtagatcatatggaggatagtc 38435066  T
Q  221 agatcactaggggaataggaaggcctagaaaaa 253  Q
    |||||||||| || | ||| || ||||||||||    
T  38435067 agatcactagaggcagaggtagacctagaaaaa 38435099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 58 - 221
Target Start/End: Complemental strand, 9556700 - 9556536
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgag--agttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtt 155  Q
    |||||| ||||||| |||||||||||| |||||| ||||| |||  ||||||||||| || | |||||||||| | |||||||| ||| || ||||||||    
T  9556700 gtaagattagacgggatatgattagaaatgacaacattagagagaaagttggggtaacacttatagtagaaaa-atggtggaaaataggcttaggtggtt 9556602  T
Q  156 tggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtca 221  Q
    | | ||| || |||||||||  ||||||||| |||||| || || | ||||||| || ||||||||    
T  9556601 taggcatgtagagagaagacaagtagattctgtagtaagaaaagtatatcagatggaggatagtca 9556536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 12141539 - 12141690
Alignment:
Q  101 gagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagc 200  Q
    |||||||||||  || | |||||||||||| ||||||||  || || ||||||||||| ||  || | |||||||||||||||||| ||||||  | ||     
T  12141539 gagttggggtagcacctatagtagaaaagatggtggaaaagaggcttaggtggtttgggcacgtagaaagaagacctgtagattctctagtaaggagagt 12141638  T
Q  201 agatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaa 252  Q
    |||||||||||| |||||||| || || || || | |||||| |||||||||    
T  12141639 agatcagattgaggatagtcaaattacaagaggtagaggaagacctagaaaa 12141690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 41858743 - 41858850
Alignment:
Q  118 gtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgata 217  Q
    ||||||||||||| |||||||||| | || || |||||||||||| || ||||||||| ||||| |||| ||||||| | || ||||| ||| || ||||    
T  41858743 gtagtagaaaagatggtggaaactgggcttagatggtttggacatgtagagagaagacatgtaggttctctagtaaagaaagtagatcggatagaggata 41858842  T
Q  218 gtcagatc 225  Q
    ||||||||    
T  41858843 gtcagatc 41858850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 253
Target Start/End: Complemental strand, 43752260 - 43752082
Alignment:
Q  77 gattagaattgacaatattagtgagag--ttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaaga 174  Q
    |||||||| |||| ||||||| |||||  ||||||||  || | |||||||||||  ||| |||| ||| || ||||| ||||||||| || ||||||||    
T  43752260 gattagaactgaccatattagagagagagttggggtagcacctatagtagaaaaggtggtagaaaataggcttaggtgatttggacatgtagagagaaga 43752161  T
Q  175 cctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    ||| |||||| | |||||   | || ||||||||| || |||| |||||||||| | || |||||||| ||||||||||    
T  43752160 cctatagattatgtagtagggagagtagatcagatggaggatactcagatcactggaggcataggaagacctagaaaaa 43752082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 9579005 - 9578911
Alignment:
Q  86 tgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgta 180  Q
    ||||||| |||| |||||||||||| | |||| |||||| ||||| | || ||| |||||| ||||||||||||||| || ||||||||||||||    
T  9579005 tgacaatgttagagagagttggggtgacacatatagtagtaaagatgatgtaaaatagacttaggtggtttggacatgtagagagaagacctgta 9578911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 175
Target Start/End: Complemental strand, 4598931 - 4598775
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag----ttggggtaatacatg 118  Q
    ||||||||| ||||||||||||| ||| |||| | |||||||||||||| |||  |||  || |||| | ||||| |||||    ||||||||  || |     
T  4598931 cgtagcagaaatgatgatgttgcgttggatgtgtggtaagactagacgggatagaattcaaaatgacgacattagagagagagagttggggtagcaccta 4598832  T
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagac 175  Q
    |||||| ||||| ||| |||||||||||  ||||||||||||||||| | |||||||    
T  4598831 tagtagtaaagatggtagaaactagactttggtggtttggacatatagaaagaagac 4598775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 13241011 - 13240940
Alignment:
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    ||||||||| |||||||||||| || ||||||||||| ||| || ||||||||| |||||||||| ||||||    
T  13241011 tagaaaagatggtggaaactaggcttaggtggtttgggcatgtagagagaagacatgtagattctttagtaa 13240940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 184
Target Start/End: Original strand, 18188731 - 18188858
Alignment:
Q  57 tgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggttt 156  Q
    |||||| |||||||| ||||||| |||| |||||| ||| | |||||||||||||  || | |  ||||||||| ||||||| || |||| |||||||||    
T  18188731 tgtaaggctagacgggatatgatcagaaatgacaacattggagagagttggggtagcacctcttctagaaaagatggtggaagctcgacttaggtggttt 18188830  T
Q  157 ggacatatacagagaagacctgtagatt 184  Q
    || ||| || |||||||| || ||||||    
T  18188831 gggcatgtaaagagaagatctatagatt 18188858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 12734651 - 12734776
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    |||||||||||||| ||| |||||||| |||||  ||||| |||||| ||||||  || | ||||||||||   ||| |||| ||| || || |||||||    
T  12734651 gtaagactagacgggataggattagaaatgacaccattagagagagtgggggtagcacctatagtagaaaaattggtagaaaataggcttagatggtttg 12734750  T
Q  158 gacatatacagagaagacctgtagat 183  Q
    ||||| || |||||||||| ||||||    
T  12734751 gacatgtaaagagaagacccgtagat 12734776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 7825273 - 7825353
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag 103  Q
    |||||||||||| | |||||||| ||| |||| | |||||||||||| | |||||||||||| ||||| |||||| |||||    
T  7825273 cgtagcagagattaggatgttgcgttggatgtgtggtaagactagactggatatgattagaaatgacactattagagagag 7825353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 224
Target Start/End: Original strand, 3481161 - 3481259
Alignment:
Q  126 aaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagat 224  Q
    ||||| ||||||||  || || ||||||||||||||| || ||||||||||| |||||||| ||| ||  | || ||||||||| || |||||||||||    
T  3481161 aaagatggtggaaaacaggcttaggtggtttggacatgtagagagaagacctatagattctgtagcaaggagagtagatcagatggaggatagtcagat 3481259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 42149776 - 42149703
Alignment:
Q  247 agaaaaatctagagattaatgagattgatagaaatatagcttaagatagaacattatggagttgtttgattcat 320  Q
    ||||| |||||||||||| |||| | ||||||||||| | ||| ||||||||||||||| ||  ||||||||||    
T  42149776 agaaagatctagagattattgagctggatagaaatatggtttatgatagaacattatggcgtaatttgattcat 42149703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 41763407 - 41763247
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagt-tggggtaatacatgtagt 122  Q
    ||||| ||||||| ||||||||  || |||  | ||||||||||||   ||| |||||| | |||||  ||||| |||||  |||||||| || | ||||    
T  41763407 gtagcggagatgaggatgttgcgatggatgagtggtaagactagacaagataggattaggaatgacaccattagagagagagtggggtaacacctatagt 41763308  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    |||||||  ||| |||| ||| || |||||||||||||||  | |||||||||||||||||    
T  41763307 agaaaagttggtagaaaataggcttaggtggtttggacatgcagagagaagacctgtagat 41763247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 7615251 - 7615334
Alignment:
Q  60 aagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactag 143  Q
    |||||||||||| ||| || ||||| |||| | ||||| |||| ||||||||| || | |||||||||||| |||| |||||||    
T  7615251 aagactagacgggataggactagaaatgaccacattagagagacttggggtaacacctatagtagaaaagatggtgcaaactag 7615334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 37470243 - 37470180
Alignment:
Q  253 atctagagattaatgagattgatagaaatatagcttaagatagaacattatggagttgtttgat 316  Q
    ||||||||||||||||| | ||| ||||||| || || ||||||||||||||| || |||||||    
T  37470243 atctagagattaatgagttggatcgaaatatggcatatgatagaacattatggtgtagtttgat 37470180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 42543265 - 42543320
Alignment:
Q  136 gaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagt 191  Q
    ||||||| ||| ||||||||||| ||| |||||||||||||||| |||||| ||||    
T  42543265 gaaactaaacttaggtggtttgggcatgtacagagaagacctgtggattctgtagt 42543320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 11412714 - 11412807
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagta 192  Q
    |||||||||||||  || | |||||||||| | |||||||| ||| || |||| |||||| ||| || ||| |||| ||||||||||| |||||    
T  11412714 gagagttggggtagcacctatagtagaaaatatggtggaaaataggcttaggttgtttgggcatttagagataagaactgtagattctgtagta 11412807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 12026121 - 12026085
Alignment:
Q  247 agaaaaatctagagattaatgagattgatagaaatat 283  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  12026121 agaaagatctagagattaatgagtttgatagaaatat 12026085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 12026261 - 12026209
Alignment:
Q  132 ggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
    |||||||||||| || ||||||||||  ||| || ||||||||||||||||||    
T  12026261 ggtggaaactaggcttaggtggtttgaccatgtagagagaagacctgtagatt 12026209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Complemental strand, 14197432 - 14197364
Alignment:
Q  119 tagtagaaaagacggtggaaactagac-tcaggtggtttggacatatacagagaagacctgtagattct 186  Q
    |||||||||||| |||||||||||| | | ||||||||||| ||| || || |||||| ||||||||||    
T  14197432 tagtagaaaagatggtggaaactaggctttaggtggtttgggcatgtagagtgaagacttgtagattct 14197364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 23714623 - 23714456
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtag 124  Q
    |||||||||| |  ||||||  ||| |||| | ||||||||||||   ||| ||||| || |||| | |||||  ||||||||| ||  |||| ||||||    
T  23714623 tagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgacgacattagatagagttggg-tagcacatatagtag 23714525  T
Q  125 aaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    |||||| ||||||||||||||| | || |||| | ||| || ||||||||| ||| |||| | ||||||    
T  23714524 aaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagtaa 23714456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 24102295 - 24102128
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtag 124  Q
    |||||||||| |  ||||||  ||| |||| | ||||||||||||   ||| ||||| || |||| | |||||  ||||||||| ||  |||| ||||||    
T  24102295 tagcagagattagaatgttgtgttggatgtgtggtaagactagacaaaataggattaaaaatgacgacattagatagagttggg-tagcacatatagtag 24102197  T
Q  125 aaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    |||||| ||||||||||||||| | || |||| | ||| || ||||||||| ||| |||| | ||||||    
T  24102196 aaaagatggtggaaactagacttatgtagtttaggcatgtagagagaagacttgtggattatgtagtaa 24102128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 43260436 - 43260528
Alignment:
Q  138 aactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    |||||| || ||||||||||| ||| |  ||| ||||| |||||||||||||||||  | || ||||||||| || | |||||| ||||||||    
T  43260436 aactaggcttaggtggtttgggcatgtgaagaaaagacttgtagattctatagtaaggagagtagatcagatggagggtagtcaaatcactag 43260528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 17900395 - 17900558
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtga--gagttggggtaatacatgta 120  Q
    ||||||||| |||| |||||||| ||| |||| | ||||||||||| || |||  ||||||| |||| | ||||| ||  |||||||||||  || | ||    
T  17900395 cgtagcagaaatgaggatgttgcgttggatgtgtggtaagactagatgggataaaattagaaatgacgacattagagacggagttggggtagcacctata 17900494  T
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
    |||||||||||||| ||||||||||||| ||||||||| ||  || ||||||||||||| ||||    
T  17900495 gtagaaaagacggtagaaactagactcatgtggtttgggcacgtagagagaagacctgtggatt 17900558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 54470128 - 54470294
Alignment:
Q  29 agagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgaga--gttggggtaatacatgtagtagaa 126  Q
    |||||||| |||||||| ||| |||| | ||||||||||| || |||||||| ||| | |||| ||||| ||||  |||||||||  || | ||||||||    
T  54470128 agagatgaggatgttgcattggatgtgtggtaagactagatgggatatgatttgaaataacaacattagagagagagttggggtagcacctatagtagaa 54470227  T
Q  127 aagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    |||| ||||||||||||||| | ||||||||| ||| || ||||||||| |||| ||| | ||||||    
T  54470228 aagatggtggaaactagacttaagtggtttgggcatgtagagagaagacatgtaaattatgtagtaa 54470294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 188
Target Start/End: Complemental strand, 51252791 - 51252661
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    |||||||||||||  ||| |||||||| |||| | ||||| |||||||||||||  || | |||||||||||| |||||||||||| || ||||||| ||    
T  51252791 gtaagactagacgagataggattagaaatgactacattagagagagttggggtagcacctctagtagaaaagatggtggaaactaggcttaggtggtatg 51252692  T
Q  158 gacatatacagagaagacctgtagattctat 188  Q
    | ||| || ||||||||| ||| ||||||||    
T  51252691 ggcatgtagagagaagacatgtggattctat 51252661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 230
Target Start/End: Original strand, 33709836 - 33710048
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacg-----gtatatgattagaattgacaatattagtgaga--gttggggtaatacat 117  Q
    ||||||||||||||||||||| ||| |||| | ||||||||||||      | ||| |||||||| || ||| ||||| ||||  |||||||||| || |    
T  33709836 tagcagagatgatgatgttgcgttggatgtgtggtaagactagacatgataggataggattagaaatggcaacattagagagagagttggggtaacacct 33709935  T
Q  118 gtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgata 217  Q
     |||||||||||| ||||||||||||  | ||||||||| | ||| |  |||||||| |||| |||||| ||||||| | ||  |||||||  || | ||    
T  33709936 atagtagaaaagatggtggaaactaggtttaggtggtttaggcatgtggagagaagaactgtggattctgtagtaaagagagtggatcagaaggagggta 33710035  T
Q  218 gtcagatcactag 230  Q
    |||||||||||||    
T  33710036 gtcagatcactag 33710048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 42285969 - 42285881
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcag 207  Q
    |||||||||||| ||| ||||||||||| ||||||||||| ||| || ||||||||||||| |||||| |||| | || ||||||||||    
T  42285969 tagtagaaaagatggtagaaactagacttaggtggtttgggcatgtatagagaagacctgtggattctgtagtcagaagagcagatcag 42285881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 35555916 - 35555844
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagt 191  Q
    |||||||||||| ||| ||||||||||| ||||||||||| ||| || ||||||||||||| |||||| ||||    
T  35555916 tagtagaaaagatggtagaaactagacttaggtggtttgggcatttagagagaagacctgtggattctgtagt 35555844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 41192829 - 41192921
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagt 191  Q
    |||||||||||||  || |  ||||||||||| ||||||||||||||| ||||| ||||  ||| || |||||||||||||||||||| ||||    
T  41192829 gagagttggggtagcacctacagtagaaaagatggtggaaactagacttaggtgatttgtgcatgtagagagaagacctgtagattctgtagt 41192921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 31403387 - 31403222
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtg------agagttggggtaataca 116  Q
    ||||||||||||||||||||||  |||||||| | || ||| ||||||| ||| |||||||| |||||| ||||| |      ||||||||||||  ||     
T  31403387 cgtagcagagatgatgatgttgagttgaatgtgtggtgagattagacgggataggattagaaatgacaacattagagacagatagagttggggtagcacc 31403288  T
Q  117 tgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
    | |||||||||| | |||||||||||| || |||||| |||| ||| || |||||| ||||| |||||    
T  31403287 tatagtagaaaa-atggtggaaactaggcttaggtgg-ttgggcatgtaaagagaacacctgaagatt 31403222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 49987345 - 49987480
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattag--tgagagttggggtaatacatgtagt 122  Q
    |||||||||||| |||||||  |||||||| | ||||||||||||   ||| |||||||| |||||| |||||   ||||||  |||| | || | ||||    
T  49987345 tagcagagatgaggatgttgtgttgaatgtttagtaagactagacatgataggattagaaatgacaacattagatagagagtctgggtcacacctatagt 49987444  T
Q  123 agaaaagacggtggaaactagactcaggtggtttgg 158  Q
    |||||||| |||||||| ||| || |||||||||||    
T  49987445 agaaaagatggtggaaaataggcttaggtggtttgg 49987480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 20105837 - 20105764
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattag 97  Q
    ||||| ||||||||||||||||  || |||| | |||||||||||||  |||||||||||| |||||| |||||    
T  20105837 gtagcggagatgatgatgttgcgatggatgtgtggtaagactagacgagatatgattagaaatgacaacattag 20105764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 44047714 - 44047550
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag--ttggggtaatacatgtag 121  Q
    |||| ||||| || |||||||| |||||||  | ||| || ||| ||| |||  ||||||| |||||| ||||| |||||  ||||||||  || | |||    
T  44047714 gtaggagagacgaggatgttgcattgaatgcgtggtaggattaggcgggatagaattagaaatgacaacattagagagagagttggggtagcacctatag 44047615  T
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattct 186  Q
    ||||||||  ||| ||| |||| || ||||||||||||||| || ||  ||||||||||||||||    
T  44047614 tagaaaaggtggtagaatctaggcttaggtggtttggacatgtagagttaagacctgtagattct 44047550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 50662374 - 50662475
Alignment:
Q  93 attagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtgg-tttggacatatacagagaagacctgtagattctatagt 191  Q
    ||||| ||||||| ||| || || | |||||||||||| |||||||| ||| || |||||| ||||| ||| || ||||||||| |||||||||||| ||    
T  50662374 attagagagagtttgggcaacacctatagtagaaaagatggtggaaagtaggcttaggtggttttgggcatgtagagagaagacttgtagattctattgt 50662473  T
Q  192 aa 193  Q
    ||    
T  50662474 aa 50662475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 51421682 - 51421807
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    |||||||||||||  ||| |||||  | |||||  ||||| ||| |||||||||  |||| |||||||  ||| | | |||| ||| || ||||||||||    
T  51421682 gtaagactagacgagataggattatgaatgacaccattagagagtgttggggtagcacatatagtagattagatgatagaaaataggcttaggtggtttg 51421781  T
Q  158 gacatatacagagaagacctgtagat 183  Q
    | ||||||||||||||||| ||||||    
T  51421782 ggcatatacagagaagaccggtagat 51421807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 253
Target Start/End: Original strand, 29398833 - 29398965
Alignment:
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtc 220  Q
    |||||||||| |||||||| ||  || | ||||||||| ||| || ||||||||||| |||||||| |||| |  | || ||| | ||| || |||||||    
T  29398833 gtagaaaagatggtggaaaatatgcttatgtggtttgggcatgtagagagaagacctatagattctgtagtgaggagagtagaccggatagaggatagtc 29398932  T
Q  221 agatcactaggggaataggaaggcctagaaaaa 253  Q
    | |||||||| || | |||||| ||||||||||    
T  29398933 aaatcactagaggcagaggaagacctagaaaaa 29398965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 42639289 - 42639233
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagac 175  Q
    |||||||||||| ||||||||| || || ||||||||||||||| || |||||||||    
T  42639289 tagtagaaaagatggtggaaaccaggcttaggtggtttggacatgtagagagaagac 42639233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 176
Target Start/End: Complemental strand, 48622907 - 48622755
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||||||||||| |||||||||||| |||  | ||||||||||||   ||| |||||| | |||||  ||||| |||||| ||||||  ||   |||||    
T  48622907 gtagcagagatgaggatgttgctttggatgagtggtaagactagacatgataggattaggaatgacaccattagagagagtgggggtagcacccatagta 48622808  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacc 176  Q
    ||||||  ||| |||| ||| || || |||||||| ||| || ||||||||||    
T  48622807 gaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacc 48622755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 28236101 - 28236260
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||||||||| |||||| ||| ||| ||| || |||||| ||||    ||| |||||| | |||||  ||||| |||||| ||||||  || | |||||    
T  28236101 gtagcagagattatgatgctgcattggatgaatggtaagattagatatgataggattaggaatgacaccattagagagagtgggggtagcacctatagta 28236200  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    ||||||  |||||||| ||| || || |||||||| ||| || ||||||||| |||||||    
T  28236201 gaaaagttggtggaaaataggcttagatggtttgggcatgtagagagaagacttgtagat 28236260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 8459291 - 8459237
Alignment:
Q  132 ggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattct 186  Q
    ||||||||||  |||  ||||||||||||||||| ||||||||| ||||||||||    
T  8459291 ggtggaaactcaacttgggtggtttggacatatagagagaagacatgtagattct 8459237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 10208988 - 10209107
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    ||||||||||| || |||  ||||||| |||||| |||||  ||||||||||||  || | |||||||||||| ||  ||||||| ||| || |||||||    
T  10208988 gtaagactagatgggatagaattagaaatgacaacattag--agagttggggtagaacctatagtagaaaagatggcagaaactaaacttagttggtttg 10209085  T
Q  158 gacatatacagagaagacctgt 179  Q
    | ||| ||  ||||||||||||    
T  10209086 ggcatgtagcgagaagacctgt 10209107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 31960180 - 31960019
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatatt--agtgagagttggggtaatacatgtag 121  Q
    ||||||||||||| |||||||| ||| |||  | |||||||||||| | ||| |||||| | |||||  |||  || |||||| ||||||  || | |||    
T  31960180 gtagcagagatgaggatgttgcgttggatgagtggtaagactagacaggataggattaggaatgacaccattagagagagagtgggggtagcacctatag 31960081  T
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    ||||||||  ||| |||| ||| || || |||||||| ||| || |||||||||| ||||||    
T  31960080 tagaaaagttggtagaaaataggcttagatggtttgggcatgtagagagaagacccgtagat 31960019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 46372054 - 46372148
Alignment:
Q  136 gaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    ||||||||||| ||||||||||  ||| || ||||||||| ||| |||||| || ||| || |||||||||||| || |  || |||||||||||    
T  46372054 gaaactagacttaggtggtttgtgcatgtagagagaagacatgtggattctgtactaagaagagcagatcagatagaggggagccagatcactag 46372148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 50471539 - 50471609
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctata 189  Q
    |||||||||||| ||||||||||||  | | ||||||||| ||| || |||||||||||||  ||||||||    
T  50471539 tagtagaaaagatggtggaaactaggtttaagtggtttgggcatgtagagagaagacctgtgaattctata 50471609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 10775734 - 10775654
Alignment:
Q  78 attagaattgacaatattagtgagagt--tggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggttt 156  Q
    ||||||| |||||| ||||| ||||||  |||||||| || | |||||||||||| ||| ||||||||||  |||||||||    
T  10775734 attagaaatgacaacattagagagagtgttggggtaacacctatagtagaaaagatggtagaaactagacataggtggttt 10775654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 25257891 - 25257790
Alignment:
Q  78 attagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacct 177  Q
    ||||||| |||||| ||||| |||||||| ||||| || |  | || |||||| ||| ||| ||||||| ||||||||||  ||| || |||||||||||    
T  25257891 attagaaatgacaacattagagagagttgaggtaacacctacaatataaaagatggtagaagctagacttaggtggtttgagcatgtagagagaagacct 25257792  T
Q  178 gt 179  Q
    ||    
T  25257791 gt 25257790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 6843781 - 6843817
Alignment:
Q  247 agaaaaatctagagattaatgagattgatagaaatat 283  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  6843781 agaaagatctagagattaatgagtttgatagaaatat 6843817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 191
Target Start/End: Complemental strand, 31897697 - 31897625
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagt 191  Q
    |||||||||||| ||| |||||||||||  |||||||||  ||| || |||| |||||||| |||||| ||||    
T  31897697 tagtagaaaagatggtagaaactagacttgggtggtttgcgcatgtagagagcagacctgtggattctgtagt 31897625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 10083105 - 10082933
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag--ttggggtaatacatgta 120  Q
    |||||||| ||||| ||||||||||||| ||| | |||||||||||||| |||  ||||||| ||| || ||||| |||||  ||||||||  || | ||    
T  10083105 cgtagcagggatgaggatgttgctttga-tgtgtggtaagactagacgggatagaattagaaatgagaacattagggagagcattggggtatcacctata 10083007  T
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaa 194  Q
    |||||||||| ||| ||||||||||| | ||||||| | ||| || ||||||||| ||| |||||| |||||||    
T  10083006 gtagaaaagatggtagaaactagacttaagtggtttcggcatgtagagagaagacttgtggattctgtagtaaa 10082933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 253
Target Start/End: Original strand, 42199299 - 42199433
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||| || ||||||||| |||||||||| ||||||  | || |||||| || ||   |||    
T  42199299 tagtagaaaagatggtggaaactagacttaggtggtttgggcatgtagagagaagacatgtagattctgtagtaaggagagtagatcacatggagagtag 42199398  T
Q  219 tcagatcactaggggaataggaaggcctagaaaaa 253  Q
    ||| ||||||||||| | || ||| ||||||||||    
T  42199399 tcaaatcactagggggagagaaagacctagaaaaa 42199433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 21952274 - 21952444
Alignment:
Q  31 agatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag----ttggggtaataca----tgtagt 122  Q
    |||||| |||||||| ||| |||| | |||||||||||||  ||| |||||||| |||||  ||||  |||||    ||||||||| |||    | ||||    
T  21952274 agatgaggatgttgcgttgcatgtgtggtaagactagacgagataagattagaaatgacagcattaaagagagagggttggggtaacacacacctatagt 21952373  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    |||||||| ||  ||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||    
T  21952374 agaaaagatggcagaaactagactcaggtggtttggacatgtagagagaagtcctgtggattctatagtaa 21952444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 4026624 - 4026530
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    |||||||||||||| || |  |||| |||||| |||||||||||| || ||||||||||||||| || |||| ||||||||||||||| ||||||    
T  4026624 gagagttggggtaacacgtaaagtaaaaaagatggtggaaactagtcttaggtggtttggacatgtagagaggagacctgtagattctgtagtaa 4026530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 32516480 - 32516642
Alignment:
Q  30 gagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaag 129  Q
    |||||||||||||||  ||| |||| | |||||||||||| | |||   |||||| |||||| ||||| ||||||||| |||| || | |||||||||||    
T  32516480 gagatgatgatgttgtgttggatgtgtggtaagactagacaggatagacttagaaatgacaacattagagagagttggagtaacacttatagtagaaaag 32516579  T
Q  130 acggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagta 192  Q
    | |||||||| ||| || ||||||||| ||| | || ||| || || |||||||||| |||||    
T  32516580 atggtggaaaataggcttaggtggtttagacttgtaaagaaaatacatgtagattctgtagta 32516642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 33667188 - 33667294
Alignment:
Q  78 attagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacct 177  Q
    ||||||| |||||| ||||  |||||||||||||  || | |||||||||||| ||| ||||||||||| ||||||||||| ||| || |||||||||||    
T  33667188 attagaaatgacaacattaacgagagttggggtagcacctatagtagaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagacct 33667287  T
Q  178 gtagatt 184  Q
    || ||||    
T  33667288 gtggatt 33667294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 79506 - 79600
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    ||||||||||||| ||| | |||||||||||| ||||||||  | | | ||||||||||||||| || ||||||||||| |||||||| ||||||    
T  79506 gagagttggggtagtacctatagtagaaaagatggtggaaaacataattaggtggtttggacatgtagagagaagacctatagattctgtagtaa 79600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 229
Target Start/End: Original strand, 43475253 - 43475363
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| |||||||||||| || |||||||||||  ||  | |||||||||||||||||  | ||||||  | || ||||||||| || |||||    
T  43475253 tagtagaaaagatggtggaaactaggcttaggtggtttgggtattcagagagaagacctgtagatgttgtagtaaggagagtagatcagatggaggatag 43475352  T
Q  219 tcagatcacta 229  Q
    |||||||||||    
T  43475353 tcagatcacta 43475363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 31636281 - 31636132
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagt 122  Q
    |||||||||||||||||||||    || || | | |||||||||||| | |||  |||| || |||||  ||||| || ||||||||||  || | ||||    
T  31636281 cgtagcagagatgatgatgtt----tggatttgtggtaagactagactggatagaattataaatgacagcattagagaaagttggggtagcacctatagt 31636186  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacc 176  Q
    |||||||| ||| ||||||||||| ||||||||||| ||| || ||||||||||    
T  31636185 agaaaagatggtagaaactagacttaggtggtttgggcatgtagagagaagacc 31636132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 7359528 - 7359395
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||| | |||||||| |||  | ||||||||||| ||| || ||||||||  |||||||||| ||||||  | || ||||||||| || |||||    
T  7359528 tagtagaaaatatggtggaaaataggtttaggtggtttgg-catgtagagagaagatatgtagattctgtagtaaggagagtagatcagatggaggatag 7359430  T
Q  219 tcagatcactaggggaataggaaggcctagaaaaa 253  Q
    ||| |||||||| || | ||||| |||||||||||    
T  7359429 tcatatcactagaggcagaggaaagcctagaaaaa 7359395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 11002786 - 11002653
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtag 124  Q
    |||||||||||| ||||||||  || |||| | ||||||| ||| || |||  ||||||| |||||| ||||| ||||||| |||||  || |  |||||    
T  11002786 tagcagagatgaggatgttgcgctggatgtgtggtaagacgagatgggatagaattagaaatgacaacattagagagagttcgggtagcacctacagtag 11002687  T
Q  125 aaaagacggtggaaactagactcaggtggtttgg 158  Q
    |||| | ||| ||||||||||| |||||||||||    
T  11002686 aaaacatggtagaaactagacttaggtggtttgg 11002653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 43558093 - 43557985
Alignment:
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtca 221  Q
    ||||||||| |||||||||||  || ||||||||||| |||||| ||||||||| ||||||| ||  ||||| || || |||| ||||  ||||| ||||    
T  43558093 tagaaaagatggtggaaactaagcttaggtggtttgggcatatagagagaagacttgtagatgctgcagtaagaagagtagattagataaatgatggtca 43557994  T
Q  222 gatcactag 230  Q
     ||||||||    
T  43557993 tatcactag 43557985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 253
Target Start/End: Original strand, 6888943 - 6889140
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtga--gagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtt 155  Q
    ||||||||||| |  |||||||||||| |||||||||||  ||  |||||||||||  || | |||  ||||||| |||||||| ||| || | ||||||    
T  6888943 gtaagactagatgagatatgattagaaatgacaatattacagaaagagttggggtagcacgtatagaggaaaagatggtggaaaataggcttaagtggtt 6889042  T
Q  156 tggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    ||||||| || ||||||||| ||| |||| | | ||||  | |  | || |||| || |||||||| | |||| | |||| |||||||||||||||||    
T  6889043 tggacatgtagagagaagacttgtggattatgtggtaaggacaataaattagatggaggatagtcaaaccacttgaggaagaggaaggcctagaaaaa 6889140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 230
Target Start/End: Original strand, 1525659 - 1525768
Alignment:
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtc 220  Q
    |||||||||| ||| ||||||||||| |||||| |||||||| || |||||||||| ||  |||||  ||| |  | || ||||||||| || || ||||    
T  1525659 gtagaaaagatggtagaaactagacttaggtggcttggacatgtagagagaagacccgtgaattctgcagttaggagagtagatcagatggaggagagtc 1525758  T
Q  221 agatcactag 230  Q
    ||||||||||    
T  1525759 agatcactag 1525768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 186
Target Start/End: Original strand, 2712898 - 2713024
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    ||||||||||||||  ||  ||||||| |||||| || ||  ||||||||||||  || | ||||  |||||| ||| || |||||||| ||||||||||    
T  2712898 gtaagactagacggggtagaattagaaatgacaacatcag--agagttggggtagcacctatagtctaaaagatggtagagactagacttaggtggtttg 2712995  T
Q  158 gacatatacagagaagacctgtagattct 186  Q
    | ||| || ||||||||||||| ||||||    
T  2712996 ggcatgtagagagaagacctgtggattct 2713024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 23979988 - 23980049
Alignment:
Q  148 aggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagat 209  Q
    ||||||||||||||| || ||||||  ||||||||||||||||||| || || |||||||||    
T  23979988 aggtggtttggacatgtagagagaaaccctgtagattctatagtaagaagagtagatcagat 23980049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 30588418 - 30588536
Alignment:
Q  73 atatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaa 172  Q
    |||||||||||| |||||||||||  ||||||| | |||| |  | || ||||||||| |||||||| |||  | | ||||||||| ||||| | |||||    
T  30588418 atatgattagaaatgacaatatta--gagagttagagtaacatgtataatagaaaagatggtggaaaataggtttaagtggtttgggcatattcggagaa 30588515  T
Q  173 gacctgtagattctatagtaa 193  Q
    ||| |||||||||| ||||||    
T  30588516 gacttgtagattctgtagtaa 30588536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 99 - 158
Target Start/End: Original strand, 14667756 - 14667815
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttgg 158  Q
    |||||||||||||  || | |||||||||||| |||||||| |||||| |||||||||||    
T  14667756 gagagttggggtagcacctatagtagaaaagatggtggaaaatagacttaggtggtttgg 14667815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 14749320 - 14749387
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattct 186  Q
    ||||||||||   ||| ||||||||||| || |||||||||||| || ||||||||||||| ||||||    
T  14749320 tagtagaaaaattggtagaaactagacttagatggtttggacatgtagagagaagacctgtggattct 14749387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 304
Target Start/End: Original strand, 35615451 - 35615506
Alignment:
Q  249 aaaaatctagagattaatgagattgatagaaatatagcttaagatagaacattatg 304  Q
    |||||| |||||||||||||| | |||| |||||||| ||| ||||||||||||||    
T  35615451 aaaaatttagagattaatgagttggataaaaatatagtttatgatagaacattatg 35615506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 2075840 - 2075679
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatatt--agtgagagttggggtaatacatgtag 121  Q
    ||||||||||||| |||||||| ||| |||  ||||||||||||||   ||| |||||| | |||||| |||  || |||||| ||||||| || |  ||    
T  2075840 gtagcagagatgaggatgttgcgttggatgagttgtaagactagacaagataggattaggaatgacaacattagagagagagtgggggtaacacctacag 2075741  T
Q  122 tagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagat 183  Q
    ||||||||  ||| || | ||| || || |||||||| ||| || |||||||||| ||||||    
T  2075740 tagaaaagttggtagacaataggcttagatggtttgggcatgtagagagaagacccgtagat 2075679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 21093778 - 21093876
Alignment:
Q  132 ggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    |||||||| ||| || |||| |||||| ||| || || |||||| || ||||| | ||||||| | || ||||||||| || |||||||||||||||||    
T  21093778 ggtggaaaataggcttaggtagtttgggcatgtagagggaagacttggagattttgtagtaaagagagtagatcagatggaggatagtcagatcactag 21093876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 12577119 - 12577078
Alignment:
Q  117 tgtagtagaaaagacggtggaaactagactcaggtggtttgg 158  Q
    |||||||||||||| ||||||||||||||| | |||||||||    
T  12577119 tgtagtagaaaagatggtggaaactagacttatgtggtttgg 12577078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 60 - 253
Target Start/End: Original strand, 5908594 - 5908793
Alignment:
Q  60 aagactagacggtatatgattagaattgacaatattagtgagag--ttggggtaatacatgtagtagaaaagacggt------ggaaactagactcaggt 151  Q
    |||||||||||| ||| |||||||| |||||| ||||| |||||  ||||||||  || | |||||||||||| |||      |||||||||||| || |    
T  5908594 aagactagacgggataagattagaaatgacaacattagagagagagttggggtagaacctatagtagaaaagatggttgaaatggaaactagacttagtt 5908693  T
Q  152 ggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaa 251  Q
    ||||||||  |||| |||||||||||||||||| | ||||||  | || ||||||| | || ||| ||||||||||||| |  |||||||| ||||||||    
T  5908694 ggtttgga--tatagagagaagacctgtagattttgtagtaaggagagtagatcaggtggaggatggtcagatcactagagacataggaagacctagaaa 5908791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 30748374 - 30748544
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagt 122  Q
    ||||||||| |||| |||||| | ||| |||| | || ||| |||||   ||| |||||||| |||||| ||||  |||||||| |||   ||  |||||    
T  30748374 cgtagcagatatgaggatgtttcgttggatgtgtggttagattagacatgataggattagaaatgacaacattacagagagttgtggtcgcaccagtagt 30748473  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaa 193  Q
    |||||||| ||||||| | || || ||||||||||| ||| || |||||||||||||||||||||||||||    
T  30748474 agaaaagatggtggaatcaaggcttaggtggtttgggcatgtagagagaagacctgtagattctatagtaa 30748544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 13172011 - 13171865
Alignment:
Q  28 cagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatatt--agtgagagttggggtaatacatgtagtaga 125  Q
    |||||||||  ||||||| ||| |||| | |||||||||||||| ||| |||||||| |||||| |||  || ||||||||||| |  || | |||||||    
T  13172011 cagagatgagaatgttgcattggatgtgtagtaagactagacgggataggattagaaatgacaagattagagagagagttggggaagcacctatagtaga 13171912  T
Q  126 aaagacggtggaaactagactcaggtggtttggacatatacagagaa 172  Q
    ||||| |||||||| ||  || ||||||||||| |||||| ||||||    
T  13171911 aaagatggtggaaaatatgcttaggtggtttgggcatataaagagaa 13171865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 32043522 - 32043663
Alignment:
Q  40 tgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgaga--gttggggtaatacatgtagtagaaaagacggtgga 137  Q
    |||||| ||| |||| | |||||||||||||| |||  ||||||| |||||| ||||| ||||  |||||||||  || | ||||| |||||| ||| ||    
T  32043522 tgttgcgttggatgtgtggtaagactagacgggatagaattagaaatgacaacattagagagagagttggggtatcacctatagtacaaaagatggtaga 32043621  T
Q  138 aactagactcaggtggtttggacatatacagagaagacctgt 179  Q
    |||||||||  |||||||||| ||| || |||||||||||||    
T  32043622 aactagactttggtggtttggccatgtagagagaagacctgt 32043663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 16917101 - 16917306
Alignment:
Q  25 tagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgaga--gttggggtaatacatgtagt 122  Q
    ||||||||||||  ||||||| |||| | | | |||||||| | | | ||| ||||| || |||||| |||||||| |  ||||||||| |||    |||    
T  16917101 tagcagagatgagaatgttgcgttgactttgtggtaagactcggctggataggattaaaaatgacaacattagtgataaagttggggtagtaccgaaagt 16917200  T
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcag 222  Q
    |||||||| |||| ||||||| || ||||||||||| ||| || ||||||| | |||||||| | ||||||  | || |||||||||||| ||||||||     
T  16917201 agaaaagatggtgcaaactaggcttaggtggtttgggcatgtaaagagaaggcttgtagatt-tgtagtaaggagagtagatcagattgaggatagtcaa 16917299  T
Q  223 atcacta 229  Q
    |||||||    
T  16917300 atcacta 16917306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 253
Target Start/End: Complemental strand, 41972087 - 41971913
Alignment:
Q  78 attagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacct 177  Q
    ||||||| ||| |||||||| ||||||| |||||| || |  ||||||||||| |||||||| ||   | ||||||||||||||| || ||||||||| |    
T  41972087 attagaaatgagaatattagagagagttagggtaacaccta-agtagaaaagatggtggaaaataagtttaggtggtttggacatgtagagagaagacgt 41971989  T
Q  178 gtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    ||||||| | ||| ||  | || ||||||| | || |||||||| |||||||| || | |||||  ||||||||||    
T  41971988 gtagattttctagcaaggagagtagatcaggtggacgatagtcaaatcactagaggcaaaggaaaacctagaaaaa 41971913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 253
Target Start/End: Original strand, 29700269 - 29700423
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaata 198  Q
    |||||||||||||  || | |||||||||||| || ||||| | | || ||||||||||| |||||| ||| ||||||  | |||||| ||||||  | |    
T  29700269 gagagttggggtagcacctatagtagaaaagatggaggaaagttggcttaggtggtttgggcatatagagaaaagaccattggattctgtagtaaggaga 29700368  T
Q  199 gcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    | |||| |||| || |||||||| |||||||| || | |||||| ||||||||||    
T  29700369 gtagattagatggaggatagtcatatcactagaggtagaggaagacctagaaaaa 29700423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 182
Target Start/End: Original strand, 45419189 - 45419313
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttg 157  Q
    ||||||||||| || ||| |||||| | |||||  ||||| |||| ||||||||  || | |||||||||||| |||  ||| |||||| ||||||||||    
T  45419189 gtaagactagaagggataagattaggaatgacaccattagagagaattggggtagcacctatagtagaaaagatggtataaaatagacttaggtggtttg 45419288  T
Q  158 gacatatacagagaagacctgtaga 182  Q
    | ||| || ||| ||||||||||||    
T  45419289 ggcatgtagagataagacctgtaga 45419313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 9695644 - 9695711
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattct 186  Q
    |||||||||||| |||||||||| | || ||||||||||| ||| || ||||||| ||||||||||||    
T  9695644 tagtagaaaagatggtggaaactcggcttaggtggtttgggcatgtagagagaagtcctgtagattct 9695711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 33511325 - 33511476
Alignment:
Q  73 atatgattagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaa 172  Q
    |||||||||||| ||| ||||||||  ||||||||||||| || | | |||||||| | | || ||| |||||| ||||||||||   ||| | ||||||    
T  33511325 atatgattagaaatgaaaatattag--agagttggggtaacacctatggtagaaaaaatgatgaaaaatagacttaggtggtttgagtatacagagagaa 33511422  T
Q  173 gacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcac 227  Q
    ||||| |||||||| |||| || | || |||||| ||||  ||||||||||||||    
T  33511423 gacctatagattctgtagttaagagagtagatca-attggagatagtcagatcac 33511476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 42493608 - 42493536
Alignment:
Q  86 tgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttgg 158  Q
    |||||| ||| | |||||||||||||| || | ||||||||||||  ||||||||||| || |||||||||||    
T  42493608 tgacaacattggagagagttggggtaacacctatagtagaaaagattgtggaaactaggcttaggtggtttgg 42493536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 45512782 - 45512630
Alignment:
Q  101 gagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagc 200  Q
    |||||||||||  || | |||||||||||| | |||||| ||  || || |||||||| |||||| |||||||| || |||||||  ||||||  | ||     
T  45512782 gagttggggtagcacctatagtagaaaagatgatggaaaataagcttagatggtttgggcatataaagagaagatctctagattcggtagtaagcagagt 45512683  T
Q  201 agatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    |||| |||| |  |||||||| |||||||| || | |||||| ||||||||||    
T  45512682 agattagatggcagatagtcaaatcactagaggcagaggaagacctagaaaaa 45512630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 230
Target Start/End: Original strand, 36143382 - 36143489
Alignment:
Q  123 agaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcag 222  Q
    |||| ||| |||||||| |||||| ||||||||||| ||| || ||| ||||||| |||||||| |||||   | || |||||| || || |||||||||    
T  36143382 agaatagatggtggaaaatagacttaggtggtttgggcatttagagaaaagacctatagattctgtagtatggagagtagatcaaatggaggatagtcag 36143481  T
Q  223 atcactag 230  Q
    ||| ||||    
T  36143482 atcgctag 36143489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 38689521 - 38689616
Alignment:
Q  89 caatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
    ||||||||  ||||||||||||||| | | | |||||||||| ||| ||||||   || ||||||||| ||||| || ||||||||| ||||||||    
T  38689521 caatattaaagagagttggggtaatgcctattgtagaaaagatggtagaaactcagcttaggtggttttgacatctagagagaagacttgtagatt 38689616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 230
Target Start/End: Complemental strand, 44681371 - 44681197
Alignment:
Q  58 gtaagactagacggtatatgattagaattgacaatattagtgag--agttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtt 155  Q
    |||||||||||||  ||| |||||||| |||||| ||||| |||  ||||| ||||  || | || ||||||||| |||||||| ||  || ||  ||||    
T  44681371 gtaagactagacgagataagattagaaatgacaacattagagagacagttgtggtagcacctataatagaaaagatggtggaaaataagcttagaaggtt 44681272  T
Q  156 tggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    |||| || || ||||||||||| ||||||||  || ||  | || ||||||||| ||||| ||||| ||||||||    
T  44681271 tggaaatctagagagaagacctatagattctgcagcaatgagagtagatcagatagatgacagtcatatcactag 44681197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 316
Target Start/End: Original strand, 79193 - 79262
Alignment:
Q  247 agaaaaatctagagattaatgagattgatagaaatatagcttaagatagaacattatggagttgtttgat 316  Q
    ||||| ||||||||||||||||| | ||||||||||| || |  |||||||||| |||| || |||||||    
T  79193 agaaagatctagagattaatgagctggatagaaatatggcctgtgatagaacataatggcgtcgtttgat 79262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 3638443 - 3638391
Alignment:
Q  253 atctagagattaatgagattgatagaaatatagcttaagatagaacattatgg 305  Q
    ||||||||||||||||| | || ||||||||||  || |||||||||||||||    
T  3638443 atctagagattaatgagttggacagaaatatagtatatgatagaacattatgg 3638391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 10080264 - 10080192
Alignment:
Q  31 agatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag 103  Q
    ||||||||||||||| |||  ||| | |||||||||||||  ||| |||||||| |||||| ||||| |||||    
T  10080264 agatgatgatgttgcgttgggtgtttggtaagactagacgagataagattagaaatgacaacattagagagag 10080192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 11733913 - 11733949
Alignment:
Q  247 agaaaaatctagagattaatgagattgatagaaatat 283  Q
    ||||||||||||||||||||||| | |||||||||||    
T  11733913 agaaaaatctagagattaatgagttagatagaaatat 11733949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 25985491 - 25985559
Alignment:
Q  78 attagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagact 146  Q
    |||||||  ||||| ||||| |||||||||||||  || | |||||||||||| ||| |||||||||||    
T  25985491 attagaaacgacaacattagagagagttggggtagcacctatagtagaaaagatggtagaaactagact 25985559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 253
Target Start/End: Complemental strand, 38178479 - 38178395
Alignment:
Q  169 agaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactaggggaataggaaggcctagaaaaa 253  Q
    |||||||||||||||| | ||||||  | || ||||||||| || |||||||| ||| |||| || | |||||| ||||||||||    
T  38178479 agaagacctgtagattttgtagtaaggagagtagatcagatggaggatagtcaaatcgctagaggtagaggaagacctagaaaaa 38178395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 41444612 - 41444552
Alignment:
Q  102 agttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacat 162  Q
    ||||||||||  || | |||||||||||| ||||||||||||  | |||||||||||||||    
T  41444612 agttggggtagcacctatagtagaaaagatggtggaaactaggtttaggtggtttggacat 41444552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 44171 - 44026
Alignment:
Q  83 aattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtaga 182  Q
    |||||||||||||||  ||||||||||||  || | |||||||||||| || ||||| ||| || ||||||||||| ||| || |||||||||||  |||    
T  44171 aattgacaatattag--agagttggggtagcacctatagtagaaaagatggcggaaaataggcttaggtggtttgggcatgtagagagaagaccttcaga 44074  T
Q  183 ttctatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    |||| ||||||  | || |||  |||| || |||||||||||||||||    
T  44073 ttctctagtaaggagagtagactagatggaggatagtcagatcactag 44026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 33083973 - 33084131
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgaga--gttggggtaatacatgta 120  Q
    ||||||||| |||| |||| ||| ||| |||| | ||||||||||| || |||  ||||||| |||| ||||||| ||||  |||||||||  || | |     
T  33083973 cgtagcagaaatgaggatgctgcgttggatgtgtggtaagactagatgggatagaattagaaatgacgatattagagagagagttggggtagcacctatg 33084072  T
Q  121 gtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgt 179  Q
    |||||||||| ||| ||||||||||| |||||||||||  || || |||||||||||||    
T  33084073 gtagaaaagatggtagaaactagacttaggtggtttgggaatgtagagagaagacctgt 33084131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 230
Target Start/End: Complemental strand, 14389469 - 14389326
Alignment:
Q  86 tgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattc 185  Q
    |||| ||||||| |||||||| ||||  || | | |||||||||| ||||||||| | ||| ||||||||||||||| || ||||||||||| |||| |     
T  14389469 tgaccatattagagagagttgaggtagcacctatcgtagaaaagatggtggaaacaa-acttaggtggtttggacatgtagagagaagacctatagactt 14389371  T
Q  186 tatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    | ||||||  | |  ||||||||| || |||||||||||||||||    
T  14389370 tgtagtaaggagaatagatcagatggaggatagtcagatcactag 14389326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 9593975 - 9593842
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatag 218  Q
    |||||||||||| ||| |||| ||| || ||||||||||| ||| || ||||||||| ||||||| || |||||| || || ||||||||| || || ||    
T  9593975 tagtagaaaagatggtagaaaataggcttaggtggtttgggcatgtagagagaagacatgtagatgctgtagtaagaagagtagatcagatggaggagag 9593876  T
Q  219 tcagatcactaggggaataggaaggcctagaaaaat 254  Q
    ||| ||||  || || | |||||| |||||||||||    
T  9593875 tcaaatca--agaggtagaggaagacctagaaaaat 9593842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 6641761 - 6641651
Alignment:
Q  38 gatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtg--agagttggggtaatacatgtagtagaaaagacggtg 135  Q
    |||||||| ||  |||| ||||||||||||| || ||| |||| ||| |||||||||||| |  ||||||||||||  || | |||||||||||| |||     
T  6641761 gatgttgcgttcgatgttttgtaagactagatgggataagattggaaatgacaatattagagatagagttggggtatcacctatagtagaaaagatggta 6641662  T
Q  136 gaaactagact 146  Q
    |||||||||||    
T  6641661 gaaactagact 6641651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 10100223 - 10100072
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||| ||||||| |||||||| ||  |||  | ||||||||||||  ||||||||||||| |||||  ||||| |||||| |||||   |||| |||||    
T  10100223 gtagcggagatgaggatgttgcgttagatgagtggtaagactagacaatatatgattagaaatgacaccattagagagagtgggggtcgcacatatagta 10100124  T
Q  124 gaaaagacggtggaaactagactcaggtggtttggacatatacagagaagac 175  Q
    ||||||  ||| |||| ||  || || |||||||||||| || |||||||||    
T  10100123 gaaaagttggtagaaaataagcttagatggtttggacatgtagagagaagac 10100072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 24665823 - 24665888
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
    |||||||||| | ||| |||| ||| || ||||||||||||||| || ||||||||||||||||||    
T  24665823 tagtagaaaatatggtagaaaataggcttaggtggtttggacatgtagagagaagacctgtagatt 24665888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 25494090 - 25494017
Alignment:
Q  148 aggtggtttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtca 221  Q
    ||||||||||||||| || |||||| || |||||||||||||||||||  || |||||| || || ||||||||    
T  25494090 aggtggtttggacatgtatagagaaaacatgtagattctatagtaaaacgagtagatcaaatagaggatagtca 25494017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 158
Target Start/End: Complemental strand, 7513752 - 7513621
Alignment:
Q  24 gtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagagttggggtaatacatgtagta 123  Q
    ||||||||||| | |||||||| |||| ||| | |||||||||||||  |||| ||||||| ||||   ||||| ||||||| ||| |  || | || ||    
T  7513752 gtagcagagataaagatgttgccttgagtgtgtggtaagactagacgcgatataattagaaatgac---attagagagagttcggggagcacctataata 7513656  T
Q  124 gaaaagacggtggaaactagactcaggtggtttgg 158  Q
    ||||||| ||| ||| ||||||| |||||||||||    
T  7513655 gaaaagatggtagaacctagacttaggtggtttgg 7513621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 1748061 - 1748006
Alignment:
Q  247 agaaaaatctagagattaatgagattgatagaaatatagcttaagatagaacatta 302  Q
    |||||||| |||||||||||||| | |||||||||||||  || ||||||||||||    
T  1748061 agaaaaatttagagattaatgagttggatagaaatatagtatatgatagaacatta 1748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 6293655 - 6293590
Alignment:
Q  119 tagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgtagatt 184  Q
    ||||| |||| | ||||||||||||  ||||||||||||| ||| || |||||| |||||||||||    
T  6293655 tagtacaaaatatggtggaaactaggttcaggtggtttgggcatgtagagagaacacctgtagatt 6293590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 21870381 - 21870303
Alignment:
Q  78 attagaattgacaatattagtgagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttgg 158  Q
    ||||||| || |||||||||  ||||||||||||  || |||||||||||||| ||| |||||| | || |||||||||||    
T  21870381 attagaaatgtcaatattag--agagttggggtagcacctgtagtagaaaagatggtagaaactcggcttaggtggtttgg 21870303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 547042 - 547118
Alignment:
Q  154 tttggacatatacagagaagacctgtagattctatagtaaaaatagcagatcagattgatgatagtcagatcactag 230  Q
    |||| |||| || ||||||||||| || ||| | ||||||| | || |||||| |||||||||||||| ||||||||    
T  547042 tttgaacatgtaaagagaagacctataaattttgtagtaaagagagtagatcatattgatgatagtcatatcactag 547118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 10617520 - 10617441
Alignment:
Q  99 gagagttggggtaatacatgtagtagaaaagacggtggaaactagactcaggtggtttggacatatacagagaagacctgt 179  Q
    |||||||||||||  || | |||||||||||||| | ||||||||||| ||||||||||  ||| || | |||||||||||    
T  10617520 gagagttggggtagcacttatagtagaaaagacg-tagaaactagacttaggtggtttgagcatgtagaaagaagacctgt 10617441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 33998371 - 33998291
Alignment:
Q  23 cgtagcagagatgatgatgttgctttgaatgtattgtaagactagacggtatatgattagaattgacaatattagtgagag 103  Q
    |||||||||||||| |||||||| ||| |||| | ||||||||||| |  ||| |||||||| |||| | ||||| |||||    
T  33998371 cgtagcagagatgaagatgttgcgttggatgtgtggtaagactagatgtgataggattagaaatgactacattagagagag 33998291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 66703 - 66777
Alignment:
Q  247 agaaaaatctagagattaatgagattgatag-aaatatagcttaagatagaacattatggagttgtttgattcat 320  Q
    ||||| ||||||||||||||||| | ||||| |||||| ||||| ||||||||||||||| ||  ||||||||||    
T  66703 agaaagatctagagattaatgagttagataggaaatatggcttatgatagaacattatggcgtaatttgattcat 66777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 2417 - 2381
Alignment:
Q  247 agaaaaatctagagattaatgagattgatagaaatat 283  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  2417 agaaagatctagagattaatgagtttgatagaaatat 2381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University