View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3016_high_5 (Length: 462)
Name: NF3016_high_5
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3016_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 98 - 437
Target Start/End: Original strand, 50965795 - 50966130
Alignment:
| Q |
98 |
tattctttagtaaaattgtagtcttctttggttagttaatttataacattgatatataaatgatttaactagcttgtattaggttaggtcatacatacat |
197 |
Q |
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| T |
50965795 |
tattctttagtaaaattgtagtcttcttaggtta----atttataacattgatatataaatgatttaactagcttgtattaggttaggtcatacatacat |
50965890 |
T |
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| Q |
198 |
atatgtctgtgtggtttaaatgagaatcatcagaagcaaagttgtacaaattaaagttgacaggtaaaaagcataagattccactataggataaatataa |
297 |
Q |
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| T |
50965891 |
atatgtctgtgtggtttaaatgagaatcatcagaagcaaagttgtacaaattaaagttgacagggaaaaagcataagattccactataggataaatataa |
50965990 |
T |
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| Q |
298 |
attaaattaaatcaaggacaaaataaatgaaacttttgggttatatggatgggtcgttttatttgggtataatatgatggtacgtggggtaggtgtggag |
397 |
Q |
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| T |
50965991 |
attaaattaaatcaaggacaaaataaatgaaacttttgggttatatggatgggtcgttttatttgggtataatatgatggtacgtggggtaggtgtggag |
50966090 |
T |
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| Q |
398 |
gttttggacaagtgtgaaaattttgtacagctttctttaa |
437 |
Q |
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| T |
50966091 |
gttttggacaagtgtgaaaattttgtacagctttctttaa |
50966130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 98 - 437
Target Start/End: Original strand, 51068930 - 51069265
Alignment:
| Q |
98 |
tattctttagtaaaattgtagtcttctttggttagttaatttataacattgatatataaatgatttaactagcttgtattaggttaggtcatacatacat |
197 |
Q |
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| T |
51068930 |
tattctttagtaaaattgtagtcttcttaggtta----atttataacattgatatataaatgatttaactagcttgtattaggttaggtcatacatacat |
51069025 |
T |
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| Q |
198 |
atatgtctgtgtggtttaaatgagaatcatcagaagcaaagttgtacaaattaaagttgacaggtaaaaagcataagattccactataggataaatataa |
297 |
Q |
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| T |
51069026 |
atatgtctgtgtggtttaaatgagaatcatcagaagcaaagttgtacaaattaaagttgacagggaaaaagcataagattccactataggataaatataa |
51069125 |
T |
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| Q |
298 |
attaaattaaatcaaggacaaaataaatgaaacttttgggttatatggatgggtcgttttatttgggtataatatgatggtacgtggggtaggtgtggag |
397 |
Q |
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| T |
51069126 |
attaaattaaatcaaggacaaaataaatgaaacttttgggttatatggatgggtcgttttatttgggtataatatgatggtacgtggggtaggtgtggag |
51069225 |
T |
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| Q |
398 |
gttttggacaagtgtgaaaattttgtacagctttctttaa |
437 |
Q |
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| T |
51069226 |
gttttggacaagtgtgaaaattttgtacagctttctttaa |
51069265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 50965705 - 50965743
Alignment:
| Q |
18 |
aacaggttcatattagatgtatgcatcaatattgaatct |
56 |
Q |
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| T |
50965705 |
aacaggttcatattagatgtatgcatcaatattgaatct |
50965743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 51068840 - 51068878
Alignment:
| Q |
18 |
aacaggttcatattagatgtatgcatcaatattgaatct |
56 |
Q |
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| T |
51068840 |
aacaggttcatattagatgtatgcatcaatattgaatct |
51068878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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