View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3016_high_8 (Length: 388)
Name: NF3016_high_8
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3016_high_8 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 54389836 - 54390223
Alignment:
| Q |
1 |
gcattaaattattgtctccagtgataataaaataagatatcagcacagagtgactgcaaaatgaatatgctatacgtaaatcctaaacacaaatagaatt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54389836 |
gcattaaattattgtctccagtaataataaaataagatatcagcacagagtgactgcaaaatgaatatgctatacgtaaatcctaaacacaaatggaatt |
54389935 |
T |
|
| Q |
101 |
taaatagaaaaagagacaataaataatgtgatgattatattaagaggtattgaagtgtgccaagaaagtatctgtatagcacatcaataaattaaattac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54389936 |
taaatagaaaaagagacaataaataatgtgatgattatattaagaggtattgaagtgtgccaagaaagtatctgtatagcacatcaataaattaaattac |
54390035 |
T |
|
| Q |
201 |
taaaactacgtcataaggccttcctttttggtacaaatgcttaagaaatatgatattactcaaaaccagaacatagcaaagcggcatcacataccttccc |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54390036 |
taaaactacgtcataaggccttcttttttggtacaaatgcttaagaaatatgatattactcaaaaccagaacatagcaaagcggcatcacataccttccc |
54390135 |
T |
|
| Q |
301 |
aacatcgttctgaaaacgtctaataagctcaatggcattattcctgaattctttttcacggcctttaaggtttactatgaccttaacc |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54390136 |
aacatcgttctgaaaacgtctaataagctcaatggcattattcctgaattctttttcacggcctttaaggtttactatgaccttaacc |
54390223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 277 - 388
Target Start/End: Complemental strand, 5728545 - 5728434
Alignment:
| Q |
277 |
caaagcggcatcacataccttcccaacatcgttctgaaaacgtctaataagctcaatggcattattcctgaattctttttcacggcctttaaggtttact |
376 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5728545 |
caaagcggcatcgcataccttcccaacatcgttctgaaaacgtctaataagctcaatagcattattcctgaattctttttcacggcctttaaggtttact |
5728446 |
T |
|
| Q |
377 |
atgaccttaacc |
388 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5728445 |
atgaccttaacc |
5728434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 5728606 - 5728542
Alignment:
| Q |
173 |
tgtatagcacatcaataaattaaattactaaaactacgtcataaggccttcctttttggtacaaa |
237 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||| ||||| |||| |||||||| |
|
|
| T |
5728606 |
tgtatagcatatcaataaattaaattactagtactacgtcataagaccttctttttcggtacaaa |
5728542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 5728987 - 5728938
Alignment:
| Q |
111 |
aagagacaataaataatgtgatgattatattaagaggtattgaagtgtgc |
160 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5728987 |
aagagacgataaacaatgtgatgattatattaagaggcattgaagtgtgc |
5728938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University