View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3016_low_1 (Length: 674)

Name: NF3016_low_1
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3016_low_1
NF3016_low_1
[»] chr3 (2 HSPs)
chr3 (1-626)||(47893630-47894255)
chr3 (627-660)||(47894274-47894307)
[»] chr8 (1 HSPs)
chr8 (153-404)||(42926175-42926423)
[»] chr2 (1 HSPs)
chr2 (333-383)||(38748172-38748222)
[»] chr6 (1 HSPs)
chr6 (182-244)||(34340199-34340261)


Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 47893630 - 47894255
Alignment:
Q  1 caaaccttaaaagccctgagtggaacacaacacattacgaggaagtcccattctccaaccatttcatttcaaacgacatagacatagccacttcatgcat 100  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  47893630 caaaccttaaaatccctgagtggaacacaacacaatacgaggaagtaacattctccaaccatttcatttcaaacgacatagacatacacacttcatgcat 47893729  T
Q  101 gactgaagatttcgacttaccaatccatgttttctcaactgaccaattcctaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47893730 gactgaagatttcgacttaccaatccatgttttctcaactgaccaattccgaatgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgac 47893829  T
Q  201 tggacggactgtccatactctcatcccggcgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgccctgagtttcgcaaat 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47893830 tggacggactgtccatactctcatcccggtgaaaaagctcgccggagagaccctcaaaaatacaattattccggcaatccttgcccggagtttcgcaaat 47893929  T
Q  301 taggaaactgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47893930 taggaaactgcaccaaaggtgattcttgccacttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaactcagctttgtaacgacgg 47894029  T
Q  401 aaccctttgccggagacgagtttgtttctttgctcataccattgatcaactccgtgtctcagataacgcttcaccggaatcatttgtttcatctcctacc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47894030 aaccctttgccggagacgagtttgtttctttgctcataccattgatcaactccgtgtctcaaataacgcttcaccggaatcatttgtttcatctcctacc 47894129  T
Q  501 tcagttcttgattcttctccaagaaaatctcgatacggtgtcccaccggtgaacgtgagggaattagttggcttcatgaggagtgttagggttgatgaat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47894130 tcagttcttgattcttctccaagaaaatctcgatacggtgtcccaccggtgaacgtgagggaattagttggcttcatgaggagtgttagggttgatgaat 47894229  T
Q  601 ggagtccggtgtctaagatgggttct 626  Q
    ||||||||||||||||||||||||||    
T  47894230 ggagtccggtgtctaagatgggttct 47894255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 627 - 660
Target Start/End: Original strand, 47894274 - 47894307
Alignment:
Q  627 ccacgaggtggttttttgagtcttccatcaaact 660  Q
    ||||||||||||||||||||||||||||||||||    
T  47894274 ccacgaggtggttttttgagtcttccatcaaact 47894307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 153 - 404
Target Start/End: Complemental strand, 42926423 - 42926175
Alignment:
Q  153 atgttcgaattcaaggttcgaaaatgccaacgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccggagagacc 252  Q
    |||||||| |||||| ||||   ||||  |||||| ||||| |||||||||||||| ||||| |  |||||||||||||| |||||||||||  | ||||    
T  42926423 atgttcgagttcaagattcgtcgatgcgcacgtggcaggtctcatgactggacggagtgtcctttttctcatcccggcgagaaagctcgccgccgtgacc 42926324  T
Q  253 ctcaaaaatacaattattccggcaatccttgccctgagtttcgcaaattaggaaactgcaccaaaggtgattcttgccacttcgctcatggtgtttttga 352  Q
    |   ||| || || || ||||||| | | || ||||| ||||| ||   |||||  ||||  ||||||||||| ||  | || |||||||||||||| ||    
T  42926323 cgagaaagtataactactccggcacttcatgtcctgattttcgtaa---aggaagttgcaagaaaggtgattcgtgtgagtttgctcatggtgttttcga 42926227  T
Q  353 atgctggcttcatccttctcgttacagaactcagctttgtaacgacggaacc 404  Q
     || |||||||||||||| |||||| | |||||||  ||||| |||||||||    
T  42926226 gtgttggcttcatccttcgcgttaccgtactcagccgtgtaaagacggaacc 42926175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 38748222 - 38748172
Alignment:
Q  333 ttcgctcatggtgtttttgaatgctggcttcatccttctcgttacagaact 383  Q
    ||||||||||| |||||||||||||||||||||||| || | |||||||||    
T  38748222 ttcgctcatggcgtttttgaatgctggcttcatcctgctagatacagaact 38748172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 244
Target Start/End: Original strand, 34340199 - 34340261
Alignment:
Q  182 acgtggtaggtcccatgactggacggactgtccatactctcatcccggcgaaaaagctcgccg 244  Q
    |||||| || || |||||||||||||| ||||||||| | ||||||||||| ||||| |||||    
T  34340199 acgtggaagatcacatgactggacggagtgtccatacgcacatcccggcgagaaagcacgccg 34340261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University