View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3016_low_12 (Length: 304)
Name: NF3016_low_12
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3016_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 44727296 - 44727529
Alignment:
| Q |
2 |
cagtaactcccaacgcgcttttattgtctatgtccatggaaacaatgatattaagaaaaccttttggtgctttaggtattttagttagtttgagatatcc |
101 |
Q |
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| T |
44727296 |
cagtaactctcaacgcgctcttatcgtctatgtccatggaaacaatgattttaggaaaaccttttggtgctttaggtatttcagttagtttgaaatatcc |
44727395 |
T |
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| Q |
102 |
taaaagatggttttcttcaaccttctgtccctcaccttcgtaaacaacaatcaatgccgcagtttgattatcatgaatagttgtcaatactatatcc--- |
198 |
Q |
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| T |
44727396 |
taaaagttggttttcttcaaccttctgtccctcaccttcgtaaacaacgatcaatgccgcagtttgattatcatgaatagttgtcaaaagtatatccgaa |
44727495 |
T |
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| Q |
199 |
atcctggttggcaccgatgtgttcctcggaataa |
232 |
Q |
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| T |
44727496 |
ttcatggttggcactggtgtgttccttggaataa |
44727529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 235
Target Start/End: Complemental strand, 47843539 - 47843400
Alignment:
| Q |
96 |
atatcctaaaagatggttttcttcaaccttctgtccctcaccttcgtaaacaacaatcaatgccgcagtttgattatcatgaatagttgtcaatactata |
195 |
Q |
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| T |
47843539 |
atatcccaaaaggtggttttcttcagccttctgtccctcaccttcgtagacaaggatcaatgcctcagtttgattatcatgaatagttgtgaaatccata |
47843440 |
T |
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| Q |
196 |
tccatcctggttggcaccgatgtgttcctcggaataacag |
235 |
Q |
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| T |
47843439 |
accctcgttgttggcatcgatgtgttcctcggaattacag |
47843400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 47844863 - 47844974
Alignment:
| Q |
61 |
ccttttggtgctttaggtattttagttagtttgagatatcctaaaagatggttttcttcaaccttctgtccctcaccttcgtaaacaacaatcaatgccg |
160 |
Q |
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| T |
47844863 |
ccttttggtgcttcaggtatttcagttattttgaaatatcccaaaaggtgattctcttcaaccttctgtgcctcaccttcgtagacaatgatcaatgctg |
47844962 |
T |
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| Q |
161 |
cagtttgattat |
172 |
Q |
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| T |
47844963 |
cagtttgattat |
47844974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 42926393 - 42926471
Alignment:
| Q |
107 |
gatggttttcttcaaccttctgtccctcaccttcgtaaacaacaatcaatgccgcagtttgattatcatgaatagttgt |
185 |
Q |
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| T |
42926393 |
gatgggtttctttagccttctctccctcaccttcgatgacaactatcaacgcctcagtttgataatcatgaattgttgt |
42926471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 808689 - 808595
Alignment:
| Q |
91 |
ttgagatatcctaaaagatggttttcttcaaccttctgtccctcaccttcgtaaacaacaatcaatgccgcagtttgattatcatgaatagttgt |
185 |
Q |
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| T |
808689 |
ttgaaatatcctaacaagtggttttcttctgccttctttccctcaccttcgtacacaagtatcaatgcctcagtttgattatcatgaatagttgt |
808595 |
T |
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