View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3016_low_13 (Length: 276)

Name: NF3016_low_13
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3016_low_13
NF3016_low_13
[»] chr7 (32 HSPs)
chr7 (20-263)||(12385548-12385792)
chr7 (180-239)||(11217073-11217132)
chr7 (183-243)||(5611512-5611572)
chr7 (180-239)||(24195605-24195664)
chr7 (180-234)||(12933422-12933476)
chr7 (180-234)||(32544776-32544830)
chr7 (182-234)||(32196687-32196739)
chr7 (184-239)||(554243-554298)
chr7 (183-234)||(31853551-31853602)
chr7 (180-239)||(35212066-35212125)
chr7 (184-239)||(38742179-38742234)
chr7 (180-234)||(17066428-17066482)
chr7 (180-234)||(25046242-25046296)
chr7 (180-234)||(31848146-31848200)
chr7 (180-234)||(32197911-32197965)
chr7 (180-241)||(13418946-13419007)
chr7 (185-234)||(31489942-31489991)
chr7 (180-232)||(25037755-25037807)
chr7 (180-239)||(41693643-41693702)
chr7 (180-243)||(41694957-41695020)
chr7 (180-239)||(42254956-42255015)
chr7 (180-231)||(43869914-43869965)
chr7 (180-234)||(24197105-24197159)
chr7 (180-234)||(31846989-31847043)
chr7 (180-234)||(40576769-40576823)
chr7 (185-234)||(30513287-30513336)
chr7 (206-245)||(46828936-46828975)
chr7 (180-234)||(32543483-32543537)
chr7 (184-234)||(36748201-36748250)
chr7 (206-239)||(36687232-36687265)
chr7 (70-130)||(43066112-43066172)
chr7 (206-234)||(46759911-46759939)
[»] chr4 (30 HSPs)
chr4 (180-234)||(42359348-42359402)
chr4 (180-234)||(3879089-3879143)
chr4 (182-234)||(19675624-19675676)
chr4 (180-234)||(22204058-22204112)
chr4 (180-230)||(45618292-45618342)
chr4 (185-234)||(41933821-41933870)
chr4 (183-239)||(3880501-3880557)
chr4 (180-240)||(33137230-33137290)
chr4 (180-239)||(17281569-17281628)
chr4 (180-239)||(17370071-17370130)
chr4 (183-234)||(32699319-32699370)
chr4 (180-234)||(19674417-19674471)
chr4 (180-234)||(54121702-54121756)
chr4 (186-234)||(35054665-35054713)
chr4 (186-234)||(41935078-41935126)
chr4 (180-239)||(29060884-29060943)
chr4 (187-234)||(38166498-38166545)
chr4 (180-234)||(17371847-17371901)
chr4 (182-244)||(34659699-34659761)
chr4 (180-218)||(40198593-40198631)
chr4 (180-234)||(45619733-45619787)
chr4 (205-245)||(50753914-50753954)
chr4 (183-234)||(33134894-33134945)
chr4 (180-239)||(42358030-42358089)
chr4 (198-239)||(5259171-5259212)
chr4 (201-234)||(32698002-32698035)
chr4 (183-243)||(17326739-17326799)
chr4 (206-234)||(20291989-20292017)
chr4 (182-234)||(37557140-37557192)
chr4 (206-234)||(42823779-42823807)
[»] chr1 (48 HSPs)
chr1 (180-234)||(27264218-27264272)
chr1 (180-239)||(9774890-9774949)
chr1 (180-240)||(27262905-27262965)
chr1 (180-240)||(35911890-35911950)
chr1 (180-234)||(46075052-46075106)
chr1 (180-240)||(37395630-37395690)
chr1 (180-235)||(9774039-9774094)
chr1 (183-234)||(24609922-24609973)
chr1 (180-243)||(35722287-35722350)
chr1 (180-239)||(47038864-47038923)
chr1 (180-234)||(20722475-20722529)
chr1 (180-234)||(23469971-23470025)
chr1 (180-234)||(35721104-35721158)
chr1 (180-234)||(39163026-39163080)
chr1 (180-241)||(26863856-26863917)
chr1 (180-232)||(17976766-17976818)
chr1 (180-232)||(17977561-17977613)
chr1 (180-232)||(27816722-27816774)
chr1 (182-234)||(51240122-51240174)
chr1 (180-239)||(20723690-20723749)
chr1 (180-239)||(50164401-50164460)
chr1 (180-234)||(11711256-11711309)
chr1 (180-234)||(24427371-24427425)
chr1 (180-234)||(26865186-26865240)
chr1 (180-234)||(34934749-34934803)
chr1 (180-234)||(37396842-37396896)
chr1 (180-241)||(27815437-27815498)
chr1 (182-239)||(48588965-48589022)
chr1 (182-239)||(48594052-48594109)
chr1 (182-239)||(48598663-48598720)
chr1 (180-240)||(24611119-24611179)
chr1 (180-239)||(11710551-11710610)
chr1 (180-234)||(39162826-39162881)
chr1 (180-234)||(24422518-24422572)
chr1 (180-234)||(30722119-30722173)
chr1 (206-248)||(33000638-33000680)
chr1 (196-234)||(45979514-45979552)
chr1 (180-234)||(46073888-46073942)
chr1 (180-241)||(13074576-13074637)
chr1 (206-234)||(19721043-19721071)
chr1 (206-234)||(26324588-26324616)
chr1 (206-234)||(30323262-30323290)
chr1 (206-234)||(31404429-31404457)
chr1 (206-234)||(33234881-33234909)
chr1 (206-234)||(35056863-35056891)
chr1 (206-234)||(38136950-38136978)
chr1 (206-234)||(45380605-45380633)
chr1 (182-234)||(48334136-48334188)
[»] chr3 (49 HSPs)
chr3 (180-245)||(52401009-52401074)
chr3 (183-234)||(46026079-46026130)
chr3 (180-234)||(39820606-39820660)
chr3 (180-241)||(53121298-53121359)
chr3 (182-234)||(20585648-20585700)
chr3 (186-234)||(40476224-40476272)
chr3 (183-239)||(40477379-40477435)
chr3 (187-239)||(44507808-44507860)
chr3 (183-234)||(9855181-9855232)
chr3 (180-239)||(46027419-46027478)
chr3 (180-234)||(22508738-22508792)
chr3 (180-234)||(39819315-39819369)
chr3 (180-234)||(43641146-43641200)
chr3 (180-234)||(46104346-46104400)
chr3 (180-234)||(52403126-52403180)
chr3 (180-234)||(52708619-52708673)
chr3 (180-241)||(3416491-3416552)
chr3 (180-234)||(20489360-20489414)
chr3 (180-234)||(45267308-45267362)
chr3 (180-234)||(47433811-47433865)
chr3 (180-234)||(48033061-48033115)
chr3 (180-234)||(48035734-48035788)
chr3 (186-234)||(42446529-42446577)
chr3 (206-245)||(38232233-38232272)
chr3 (183-234)||(54437472-54437523)
chr3 (180-234)||(4705684-4705738)
chr3 (180-234)||(20488369-20488423)
chr3 (180-234)||(32637190-32637244)
chr3 (180-234)||(45268572-45268626)
chr3 (180-241)||(32635590-32635651)
chr3 (180-232)||(977848-977900)
chr3 (182-234)||(52707539-52707591)
chr3 (180-244)||(53122473-53122537)
chr3 (187-234)||(37845408-37845455)
chr3 (184-243)||(38505585-38505644)
chr3 (206-245)||(45320948-45320987)
chr3 (196-234)||(15782218-15782256)
chr3 (180-234)||(50563813-50563867)
chr3 (180-230)||(55346318-55346368)
chr3 (180-233)||(11914835-11914888)
chr3 (206-239)||(32119553-32119586)
chr3 (206-239)||(35177253-35177286)
chr3 (206-239)||(47114485-47114518)
chr3 (206-234)||(7957195-7957223)
chr3 (206-234)||(9261792-9261820)
chr3 (206-234)||(29678356-29678384)
chr3 (206-234)||(40370288-40370316)
chr3 (206-234)||(40545808-40545836)
chr3 (195-239)||(42444035-42444079)
[»] chr2 (26 HSPs)
chr2 (180-245)||(25979253-25979318)
chr2 (180-244)||(1777462-1777526)
chr2 (180-234)||(2412430-2412484)
chr2 (180-234)||(23861755-23861809)
chr2 (180-234)||(25977873-25977927)
chr2 (180-234)||(11087052-11087106)
chr2 (180-234)||(36837780-36837834)
chr2 (180-234)||(1778792-1778846)
chr2 (189-243)||(3924877-3924931)
chr2 (180-234)||(4038845-4038899)
chr2 (180-234)||(4040218-4040272)
chr2 (180-234)||(8810705-8810759)
chr2 (180-239)||(8809594-8809654)
chr2 (180-240)||(30843641-30843701)
chr2 (206-241)||(40125258-40125293)
chr2 (195-241)||(24754175-24754221)
chr2 (180-234)||(25283274-25283328)
chr2 (206-244)||(43672287-43672325)
chr2 (206-239)||(3172018-3172051)
chr2 (206-242)||(15842792-15842828)
chr2 (206-234)||(25299748-25299776)
chr2 (182-234)||(29794321-29794372)
chr2 (182-234)||(30215816-30215868)
chr2 (206-234)||(34317801-34317829)
chr2 (182-234)||(38231434-38231486)
chr2 (183-239)||(43824161-43824217)
[»] chr5 (21 HSPs)
chr5 (183-239)||(34911833-34911889)
chr5 (180-239)||(3936576-3936635)
chr5 (180-239)||(27571131-27571190)
chr5 (180-234)||(4565396-4565450)
chr5 (184-234)||(27570059-27570109)
chr5 (183-234)||(14809166-14809217)
chr5 (180-234)||(3938062-3938116)
chr5 (180-234)||(3954055-3954109)
chr5 (180-234)||(31540499-31540553)
chr5 (180-232)||(4777645-4777697)
chr5 (180-234)||(3205104-3205158)
chr5 (180-234)||(6894012-6894066)
chr5 (184-234)||(15599768-15599818)
chr5 (180-234)||(25254133-25254187)
chr5 (180-234)||(25317923-25317977)
chr5 (206-243)||(5917429-5917466)
chr5 (206-242)||(1381580-1381616)
chr5 (206-234)||(6244410-6244438)
chr5 (206-234)||(28871640-28871668)
chr5 (206-234)||(40038827-40038855)
chr5 (206-234)||(42553645-42553673)
[»] scaffold0562 (1 HSPs)
scaffold0562 (180-234)||(9925-9979)
[»] scaffold0230 (1 HSPs)
scaffold0230 (180-234)||(433-487)
[»] chr8 (37 HSPs)
chr8 (180-234)||(10717124-10717178)
chr8 (180-234)||(10718450-10718504)
chr8 (180-234)||(28996837-28996891)
chr8 (180-232)||(1376940-1376992)
chr8 (182-234)||(1420446-1420498)
chr8 (183-239)||(14197823-14197879)
chr8 (180-239)||(22534724-22534783)
chr8 (183-234)||(28997998-28998049)
chr8 (180-239)||(36588220-36588279)
chr8 (180-234)||(45517962-45518016)
chr8 (180-232)||(1385557-1385609)
chr8 (182-234)||(3483636-3483688)
chr8 (180-240)||(22272272-22272332)
chr8 (180-239)||(22533315-22533374)
chr8 (180-234)||(4182625-4182679)
chr8 (180-234)||(22270946-22271000)
chr8 (180-239)||(36589389-36589448)
chr8 (180-239)||(39439922-39439981)
chr8 (180-234)||(4183981-4184035)
chr8 (180-234)||(30124225-30124279)
chr8 (180-234)||(38456732-38456786)
chr8 (180-234)||(38658484-38658538)
chr8 (180-245)||(41846639-41846704)
chr8 (180-232)||(34904511-34904563)
chr8 (182-234)||(39440426-39440478)
chr8 (196-239)||(10292814-10292857)
chr8 (206-245)||(11019512-11019551)
chr8 (206-245)||(28346386-28346425)
chr8 (206-245)||(44997923-44997962)
chr8 (197-235)||(3484806-3484844)
chr8 (180-234)||(41354474-41354528)
chr8 (206-239)||(2728230-2728263)
chr8 (206-239)||(28497253-28497286)
chr8 (206-235)||(28497588-28497617)
chr8 (206-234)||(5357426-5357454)
chr8 (206-234)||(5357732-5357760)
chr8 (182-234)||(41847184-41847236)
[»] chr6 (27 HSPs)
chr6 (180-234)||(18810535-18810589)
chr6 (180-234)||(21953209-21953263)
chr6 (180-234)||(21165249-21165303)
chr6 (180-234)||(34998143-34998197)
chr6 (150-234)||(20897469-20897553)
chr6 (183-234)||(3276370-3276421)
chr6 (180-239)||(3279501-3279560)
chr6 (180-234)||(17517311-17517365)
chr6 (182-239)||(1171655-1171712)
chr6 (182-234)||(17516165-17516217)
chr6 (183-239)||(20391212-20391268)
chr6 (182-234)||(29291362-29291414)
chr6 (180-239)||(16995449-16995508)
chr6 (206-250)||(6412548-6412592)
chr6 (182-234)||(17000281-17000333)
chr6 (180-234)||(1972403-1972457)
chr6 (180-234)||(20393270-20393324)
chr6 (196-234)||(20895961-20895999)
chr6 (180-234)||(25440675-25440729)
chr6 (180-234)||(34995117-34995171)
chr6 (206-243)||(11448531-11448568)
chr6 (206-243)||(13268103-13268140)
chr6 (206-239)||(17765344-17765377)
chr6 (182-234)||(1974156-1974208)
chr6 (206-234)||(19129489-19129517)
chr6 (180-224)||(26419526-26419570)
chr6 (186-234)||(30253547-30253595)
[»] scaffold0002 (4 HSPs)
scaffold0002 (180-232)||(344942-344994)
scaffold0002 (183-234)||(374338-374389)
scaffold0002 (183-234)||(345902-345953)
scaffold0002 (190-234)||(376381-376425)
[»] scaffold0516 (1 HSPs)
scaffold0516 (64-134)||(1019-1089)
[»] scaffold0106 (2 HSPs)
scaffold0106 (180-234)||(29732-29786)
scaffold0106 (180-234)||(30909-30963)
[»] scaffold0009 (1 HSPs)
scaffold0009 (184-234)||(202582-202632)
[»] scaffold0001 (2 HSPs)
scaffold0001 (180-234)||(120987-121041)
scaffold0001 (180-234)||(119596-119650)
[»] scaffold0517 (2 HSPs)
scaffold0517 (180-240)||(11524-11584)
scaffold0517 (180-234)||(10318-10372)
[»] scaffold0765 (1 HSPs)
scaffold0765 (183-234)||(1863-1914)
[»] scaffold0095 (1 HSPs)
scaffold0095 (182-234)||(42759-42811)
[»] scaffold0599 (1 HSPs)
scaffold0599 (180-233)||(6586-6639)
[»] scaffold0119 (1 HSPs)
scaffold0119 (205-234)||(16727-16756)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 12385548 - 12385792
Alignment:
Q  20 atgttaaatgacaaaaatgccacgtcaatgccgcatgtccaactttacatagtcagatactgccacataggtagaaatgcaccaaaacatcaataaagtg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12385548 atgttaaatgacaaaaatgccacgtcaatgccgcatgtccaactttacatagtcagatactgccacataggtagaaatgcaccaaaacatcaataaagtg 12385647  T
Q  120 gggccaaggacaattctnnnnnnnnnnnnnttttgcagggatggatttc-aannnnnnnnnaccagggaccaaaatccaaactcgctatatttgcaggga 218  Q
    ||||||||||||||| |             ||||||||||||| ||||| ||         |||||||||||||||||||||||||||||||||||||||    
T  12385648 gggccaaggacaattttaaaaaacaaaaaattttgcagggatgaatttcaaatttttttttaccagggaccaaaatccaaactcgctatatttgcaggga 12385747  T
Q  219 ccaaaatcatattttatccttaattttcttaacttatgcgaccct 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12385748 ccaaaatcatattttatccttaattttcttaacttatgcgaccct 12385792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 11217073 - 11217132
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||    
T  11217073 accagggaccaaaattcaaactcgctatatttgcagggaccaaaagcatattttaacctt 11217132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 5611512 - 5611572
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatt 243  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  5611512 agggacgaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctaaatt 5611572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 24195664 - 24195605
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  24195664 accagggagcaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctt 24195605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 12933476 - 12933422
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||    
T  12933476 accagggaccaaaattcaaactcactatatttgcagggaccaaaagcatatttta 12933422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 32544776 - 32544830
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  32544776 accaaggaccaaaacccaaattcgctatatttgcagggaccaaaatcatatttta 32544830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 32196739 - 32196687
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  32196739 cagggaccaaaatccaaatacgctatatttgcagggaccaaaaacatatttta 32196687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 554298 - 554243
Alignment:
Q  184 gggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||||| ||||    
T  554298 gggaccaaaacccaaactcgctatatttgcagggaccaatattatattttagcctt 554243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 31853602 - 31853551
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  31853602 agggaccaaaatccaaactcacaatatttgcagggaccaaaaacatatttta 31853551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 35212125 - 35212066
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| |||||||||  ||||||||||||||||||| ||||||||| ||||    
T  35212125 accagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatattttagcctt 35212066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 38742234 - 38742179
Alignment:
Q  184 gggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||    
T  38742234 gggaccaaaacccaaactcgctatatttgcagggactaaaaacatattttaacctt 38742179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 17066482 - 17066428
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||||||||||||||||||||||  |||| |||||||||    
T  17066482 accagggaccaaaacccaaactcgctatatttgcagggattaaaagcatatttta 17066428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 25046242 - 25046296
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||    
T  25046242 accatggaccaaaatctaaactcgccatatttgcaaggaccaaaatcatatttta 25046296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 31848146 - 31848200
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||    
T  31848146 accagggaccaaaacccaaattcgctatatttgcagggactaaaaacatatttta 31848200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 32197911 - 32197965
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  32197911 accaaggaccaaaacccaaattcgctatatttgcagggaccaaaagcatatttta 32197965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 13419007 - 13418946
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaa 241  Q
    |||||||||||| | ||||| |||| ||||||||||||||||||| ||||||||| ||||||    
T  13419007 accagggaccaatacccaaattcgcaatatttgcagggaccaaaaacatattttagccttaa 13418946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 31489942 - 31489991
Alignment:
Q  185 ggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| ||||||||| |||||||||||||||||||| |||||||||    
T  31489942 ggaccaaaacccaaactcgttatatttgcagggaccaaaaacatatttta 31489991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 25037807 - 25037755
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    ||||||||||||||| ||||||||  |||||||||||||| ||||||||||||    
T  25037807 accagggaccaaaattcaaactcgtcatatttgcagggactaaaatcatattt 25037755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 41693702 - 41693643
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| ||||| |||| ||||||||||||| ||||| ||||||||| ||||    
T  41693702 accagggaccaaaacccaaattcgccatatttgcagggatcaaaaacatattttagcctt 41693643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 41694957 - 41695020
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatt 243  Q
    ||||||||||||||  |||||||||||||||||||||||  |||| ||||||||| ||| ||||    
T  41694957 accagggaccaaaactcaaactcgctatatttgcagggatgaaaaacatattttagcctaaatt 41695020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 42255015 - 42254956
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||  ||||||||| |||||| |||||||||||| ||||||||| ||||    
T  42255015 accagggaccaaaactcaaactcgccatatttacagggaccaaaagcatattttagcctt 42254956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 43869914 - 43869965
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatt 231  Q
    |||||||||||||| ||||| | |||||||||||||||||||||| ||||||    
T  43869914 accagggaccaaaacccaaattggctatatttgcagggaccaaaaccatatt 43869965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 24197105 - 24197159
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| |||||||  |||| |||||||||||||||||||||||| |||||||||    
T  24197105 accaggaaccaaaactcaaattcgctatatttgcagggaccaaaagcatatttta 24197159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 31847043 - 31846989
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| ||||||||||||| | | |||||||||||||||||||| |||||||||    
T  31847043 accaggaaccaaaatccaaattagatatatttgcagggaccaaaagcatatttta 31846989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 40576823 - 40576769
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||| |||||||||||||| |||  ||||||||||||||||||| |||||||||    
T  40576823 accagagaccaaaatccaaattcgtcatatttgcagggaccaaaagcatatttta 40576769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 30513287 - 30513336
Alignment:
Q  185 ggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||   ||||||||| |||||||||||||||||||    
T  30513287 ggaccaaaatccaaactcatcatatttgcaaggaccaaaatcatatttta 30513336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 46828975 - 46828936
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  46828975 atatttgcagggaccaaaaccatattttagccttaatttt 46828936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 32543537 - 32543483
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||| ||||| ||||||| |||||||||| ||||||||||| |||||||||    
T  32543537 accaaggatcaaaacccaaacttgctatatttgtagggaccaaaagcatatttta 32543483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 36748250 - 36748201
Alignment:
Q  184 gggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||| |||||||| | ||||||||||||||||||| |||||||||    
T  36748250 gggaccaaaacccaaactctc-atatttgcagggaccaaaaacatatttta 36748201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 36687232 - 36687265
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  36687232 atatttgcagggaccaaaatcatattttagcctt 36687265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 43066172 - 43066112
Alignment:
Q  70 agtcagatactgccacataggtagaaatgcaccaaaacatcaataaagtggggccaaggac 130  Q
    ||||||| | ||||||||||| | ||||||| |||| ||||||| |||| |||||||||||    
T  43066172 agtcagagaatgccacataggcaaaaatgcaacaaatcatcaattaagtagggccaaggac 43066112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 46759911 - 46759939
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  46759911 atatttgcagggaccaaaatcatatttta 46759939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 42359348 - 42359402
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42359348 accagggaccaaaatccaaactcgctatatttgcagggaccaaaaacatatttta 42359402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 3879143 - 3879089
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  3879143 accagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatatttta 3879089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 19675624 - 19675676
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  19675624 cagggaccaaaatccaaactcgttatatttgcagggaccaaaagcatatttta 19675676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 22204112 - 22204058
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||    
T  22204112 accagggactaaaacccaaactcgctatatttgcagggaccaaaaacatatttta 22204058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 45618342 - 45618292
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatat 230  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  45618342 accagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatat 45618292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 41933870 - 41933821
Alignment:
Q  185 ggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  41933870 ggaccaaaacccaaactcgctatatttgcagagaccaaaatcatatttta 41933821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 3880501 - 3880557
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||||||||| ||||    
T  3880501 agggaccaaaacccaaactcgctatatttgcaggaaccaaaaacatattttagcctt 3880557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 33137230 - 33137290
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctta 240  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||| |||||    
T  33137230 accagggactaaaacccaaactcgctatatttgcagggatcaaaaacatattttagcctta 33137290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 17281628 - 17281569
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| || |||||| ||||    
T  17281628 accagggaccaaaatccaaattcgctatatttgcagggactaaaagcacattttagcctt 17281569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 17370130 - 17370071
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| || |||||| ||||    
T  17370130 accagggaccaaaatccaaattcgctatatttgcagggactaaaagcacattttagcctt 17370071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 32699319 - 32699370
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||||||    
T  32699319 agggaccaaaacccaaactcgctatatttacagggaccaaaaacatatttta 32699370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 19674471 - 19674417
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||| |||||||||    
T  19674471 accagggaccaaaactcaaactcgctatatttgcaaggaccaaaagcatatttta 19674417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 54121702 - 54121756
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||||||||  |||||||||||| |||||||||||||||    
T  54121702 accagggaccaaaacccaaactcgccgtatttgcagggagcaaaatcatatttta 54121756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 35054713 - 35054665
Alignment:
Q  186 gaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  35054713 gaccaaaacccaaattcgctatatttgcagggactaaaatcatatttta 35054665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 41935078 - 41935126
Alignment:
Q  186 gaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||||||    
T  41935078 gaccaaaacccaaactcgttatatttgcagggaccaaaaacatatttta 41935126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 29060884 - 29060943
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||| |||||||||| |||||||||||||||||||||||  |||| ||||||||| ||||    
T  29060884 accaaggaccaaaattcaaactcgctatatttgcagggattaaaaacatattttagcctt 29060943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 38166545 - 38166498
Alignment:
Q  187 accaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||    
T  38166545 accaaaatccaaactcgctatatttgcagggattaaaaacatatttta 38166498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 17371847 - 17371901
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||| ||| |||||||||||||| ||||| |||||||||    
T  17371847 accagggaccaaaacccaaattcgttatatttgcagggatcaaaagcatatttta 17371901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 34659761 - 34659699
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaattt 244  Q
    |||||||||||| |  ||||||| ||||||||||||||||||| ||||||||| |||| ||||    
T  34659761 cagggaccaaaaccttaactcgccatatttgcagggaccaaaagcatattttagccttcattt 34659699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 40198631 - 40198593
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcaggga 218  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  40198631 accagggaccaaaacccaaactcgctatatttgcaggga 40198593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 45619733 - 45619787
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| ||||| | ||||||||||||||||||||||| |||| |||||||||    
T  45619733 accagggaacaaaacctaaactcgctatatttgcagggactaaaaacatatttta 45619787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 50753954 - 50753914
Alignment:
Q  205 tatatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  50753954 tatatttgcagggaccaaaaccatattttaaccttaatttt 50753914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 33134945 - 33134894
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| |||||||||||  ||||||||||||| ||||| |||||||||    
T  33134945 agggaccaatatccaaactcgtcatatttgcagggatcaaaaacatatttta 33134894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 42358089 - 42358030
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||| |||||  ||||||  ||||||||||||||||||||| ||||||||| ||||    
T  42358089 accagggatcaaaactcaaacttcctatatttgcagggaccaaaaacatattttagcctt 42358030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 5259171 - 5259212
Alignment:
Q  198 aactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||| ||||||||||||||||||| ||||||||| ||||    
T  5259171 aactcgccatatttgcagggaccaaaaacatattttagcctt 5259212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 32698035 - 32698002
Alignment:
Q  201 tcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||| |||||||||||||||    
T  32698035 tcgctatatttgcagggatcaaaatcatatttta 32698002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 17326739 - 17326799
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatt 243  Q
    ||||||||||| |||||  | ||||||||| ||||||||||| ||||||| | ||||||||    
T  17326739 agggaccaaaacccaaatgccctatatttggagggaccaaaaccatatttaagccttaatt 17326799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 20292017 - 20291989
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  20292017 atatttgcagggaccaaaatcatatttta 20291989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 37557140 - 37557192
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||| |||||| ||||  | |||||||||||||||||||| |||||||||    
T  37557140 cagggactaaaatcaaaacgaggtatatttgcagggaccaaaaccatatttta 37557192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 42823807 - 42823779
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  42823807 atatttgcagggaccaaaatcatatttta 42823779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 27264218 - 27264272
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27264218 accagggaccaaaacccaaactcgctatatttgcagggaccaaaatcatatttta 27264272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 9774890 - 9774949
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  9774890 accagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatattttagcctt 9774949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 27262965 - 27262905
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctta 240  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||    
T  27262965 accagggaccaaaacacaaactcgctatatttgcagggaccaaaaacatattttagcctta 27262905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 35911890 - 35911950
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctta 240  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  35911890 accaaggaccaaaatccaaattcgctatatttgcagggaccaaaagcatattttagcctta 35911950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 46075052 - 46075106
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  46075052 accagggaccaaaacccaaactcgctatatttgcagggatcaaaaacatatttta 46075106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 37395690 - 37395630
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctta 240  Q
    |||||||||||||| |||||  ||||||||||||||||||||||| ||||||||| |||||    
T  37395690 accagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagcctta 37395630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 9774094 - 9774039
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttat 235  Q
    ||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||    
T  9774094 accagggaccaaaactcaaactcgttatatttgcagggaccaaaaacatattttat 9774039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 24609973 - 24609922
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  24609973 agggaccaaaacccaaactcgccatatttgcagggaccaaaaacatatttta 24609922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 35722287 - 35722350
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatt 243  Q
    ||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||| ||||    
T  35722287 accagagaccaaaatccaaattcgctatatttacagggaccaaaaacatattttagcctaaatt 35722350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 47038923 - 47038864
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||| ||||||||| ||||    
T  47038923 accagggaccaaaacccaaactagctatatttgcagggactaaaaacatattttagcctt 47038864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 20722529 - 20722475
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| || ||||||    
T  20722529 accagggaccaaaacccaaattcgctatatttgcagggaccaaaagcacatttta 20722475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 23469971 - 23470025
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| ||||| | |||||||||||||||||||||||||||| |||||||||    
T  23469971 accagggatcaaaaccgaaactcgctatatttgcagggaccaaaaacatatttta 23470025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 35721158 - 35721104
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||| |||||||||    
T  35721158 accagggaccaaaacccaaattcgttatatttgcagggaccaaaaacatatttta 35721104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 39163026 - 39163080
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||| ||||| ||||||||||||||||||| |||||||||    
T  39163026 accagggaccaaaacccaacctcgccatatttgcagggaccaaaagcatatttta 39163080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 26863917 - 26863856
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaa 241  Q
    ||||||||||||||  |||| |||||||||||||||||||||||| || |||||| ||||||    
T  26863917 accagggaccaaaactcaaattcgctatatttgcagggaccaaaaacacattttagccttaa 26863856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 17976818 - 17976766
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    |||||||||||||| ||||| |||||||||||||||| ||||||| |||||||    
T  17976818 accagggaccaaaacccaaattcgctatatttgcaggaaccaaaaccatattt 17976766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 17977561 - 17977613
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    |||| ||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  17977561 accaaggaccaaaacccaaattcgctatatttgcagggaccaaaaccatattt 17977613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 27816722 - 27816774
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    |||||||||||||| ||||| | |||||||||||||||||||||| |||||||    
T  27816722 accagggaccaaaacccaaattggctatatttgcagggaccaaaaccatattt 27816774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 51240174 - 51240122
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| ||||||||||| ||||||||||||||| |||||||| |||||||||    
T  51240174 cagggatcaaaatccaaattcgctatatttgcagagaccaaaaacatatttta 51240122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 20723690 - 20723749
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||| ||||  |||| |||||||||||||||||||||||| ||||||||| ||||    
T  20723690 accagggactaaaactcaaattcgctatatttgcagggaccaaaaacatattttagcctt 20723749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 50164460 - 50164401
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||| |||||||||  ||||||||| ||||||||||||||||||| ||||||||| ||||    
T  50164460 accaaggaccaaaactcaaactcgccatatttgcagggaccaaaagcatattttagcctt 50164401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 11711256 - 11711309
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||  ||||| |||||||||||||||||||||||| |||||||||    
T  11711256 accagggaccaaac-ccaaattcgctatatttgcagggaccaaaaacatatttta 11711309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 24427371 - 24427425
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| ||||  ||||||||||||||||| ||||||||||| |||||||||    
T  24427371 accagggactaaaactcaaactcgctatatttgtagggaccaaaaacatatttta 24427425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 26865186 - 26865240
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||  ||||||||    
T  26865186 accagggactaaaatccaaattcgctatatttgcagagaccaaaaatatatttta 26865240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 34934749 - 34934803
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||||||||| ||||| ||||||||||||||||||| |||| |||||||||    
T  34934749 accaaggaccaaaacccaaattcgctatatttgcagggacaaaaagcatatttta 34934803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 37396842 - 37396896
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  37396842 accaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatatttta 37396896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 27815498 - 27815437
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaa 241  Q
    |||||||||||||| ||||| | ||||||||||||||||||| || ||||||| | ||||||    
T  27815498 accagggaccaaaacccaaattggctatatttgcagggaccagaaccatatttaagccttaa 27815437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 48588965 - 48589022
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||| |||||||| | |||||| |||||||||||| ||||||||| ||||    
T  48588965 cagggaccaaaacccaaactcaccatatttacagggaccaaaaacatattttagcctt 48589022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 48594052 - 48594109
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||| ||||| |||||||||| |||||| |||||||||||| ||||||||| ||||    
T  48594052 cagggatcaaaacccaaactcgccatatttacagggaccaaaaacatattttagcctt 48594109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 48598663 - 48598720
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||| ||||| |||||||||| |||||| |||||||||||| ||||||||| ||||    
T  48598663 cagggatcaaaacccaaactcgccatatttacagggaccaaaaacatattttagcctt 48598720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 24611119 - 24611179
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctta 240  Q
    ||||||||||||||  ||||||||  |||||| |||||||||||| ||||||||| |||||    
T  24611119 accagggaccaaaactcaaactcgtcatatttacagggaccaaaaacatattttagcctta 24611179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 11710610 - 11710551
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| |||| |||| ||||||| |||||| ||||| ||||||||| ||||    
T  11710610 accagggaccaaaacccaacctcgttatatttacagggatcaaaaacatattttagcctt 11710551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 39162881 - 39162826
Alignment:
Q  180 accagggaccaaaatccaaactcgcta-tatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||||||||||||||| | |||||||||||||||||| |||| ||||    
T  39162881 accaaggaccaaaatccaaactcgccattatttgcagggaccaaaagcataattta 39162826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 24422572 - 24422518
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| ||||||||||  || |||||||| |||||||||||| |||||||||    
T  24422572 accagggatcaaaatccaacttcactatatttacagggaccaaaagcatatttta 24422518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 30722173 - 30722119
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||||||||||||||||| |||||||| |||||||  |||| |||||||||    
T  30722173 accaaggaccaaaatccaaacttgctatattcgcagggattaaaagcatatttta 30722119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 33000638 - 33000680
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaattttctt 248  Q
    ||||||||||||||||||| ||||||||| |||| ||||||||    
T  33000638 atatttgcagggaccaaaaccatattttagcctttattttctt 33000680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 45979514 - 45979552
Alignment:
Q  196 caaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  45979514 caaattcgctatatttgcagggaccaaaaacatatttta 45979552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 46073942 - 46073888
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| |||| ||||| | |||||||||||||||| ||||| |||||||||    
T  46073942 accagggactaaaacccaaatttgctatatttgcagggatcaaaagcatatttta 46073888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 13074576 - 13074637
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaa 241  Q
    ||||||||||||||  ||||||||  ||||||||||| |||||||  |||||||| ||||||    
T  13074576 accagggaccaaaactcaaactcgtcatatttgcaggaaccaaaaatatattttagccttaa 13074637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 19721043 - 19721071
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  19721043 atatttgcagggaccaaaatcatatttta 19721071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 26324616 - 26324588
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  26324616 atatttgcagggaccaaaatcatatttta 26324588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 30323262 - 30323290
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  30323262 atatttgcagggaccaaaatcatatttta 30323290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 31404457 - 31404429
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  31404457 atatttgcagggaccaaaatcatatttta 31404429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 33234881 - 33234909
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  33234881 atatttgcagggaccaaaatcatatttta 33234909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 35056863 - 35056891
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  35056863 atatttgcagggaccaaaatcatatttta 35056891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 38136950 - 38136978
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  38136950 atatttgcagggaccaaaatcatatttta 38136978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 45380605 - 45380633
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  45380605 atatttgcagggaccaaaatcatatttta 45380633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 48334136 - 48334188
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||  |||| |||||||||||| ||||||||||| |||||||||    
T  48334136 caggaaccaaaactcaaattcgctatatttgtagggaccaaaagcatatttta 48334188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 49)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 52401074 - 52401009
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  52401074 accagggaccaaaacccaaactcgccatatttgcagggaccaaaaacatattttagccttaatttt 52401009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 46026130 - 46026079
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  46026130 agggaccaaaatccaaactcgctatatttgcagggaccaaaaacatatttta 46026079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 39820606 - 39820660
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  39820606 accagggaccaaaacccaaactcgctatatttgcagggaccaaaaccatatttta 39820660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 53121359 - 53121298
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaa 241  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  53121359 accagggactaaaacccaaactcgctatatttgcagggaccaaaaacatattttagccttaa 53121298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 20585648 - 20585700
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  20585648 cagggaccaaaatccaaactcgctatatttgcagggatcaaaaacatatttta 20585700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 40476272 - 40476224
Alignment:
Q  186 gaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40476272 gaccaaaatccaaactcgctatatttgcagggaccaaaaacatatttta 40476224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 40477379 - 40477435
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||    
T  40477379 agggaccaaaacccaaactcgttatatttgcagggaccaaaatcatattttagcctt 40477435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 44507808 - 44507860
Alignment:
Q  187 accaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  44507808 accaaaattcaaactcgctatatttgcagggaccaaaatcatattttagcctt 44507860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 9855232 - 9855181
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  9855232 agggaccaaaatccaaactcgctatatttacagggatcaaaatcatatttta 9855181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 46027419 - 46027478
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||| ||||    
T  46027419 accagggaccaaaattcaaactcgctatatttgcagggaccaaaagtatattttagcctt 46027478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 22508792 - 22508738
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  22508792 accaaggaccaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 22508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 39819369 - 39819315
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| |||||||||    
T  39819369 accagggaccaaaattcaaactcgctatatttgcagggactaaaaccatatttta 39819315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 43641200 - 43641146
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||| |||||||||||||||||||||||||||| |||| |||||||||    
T  43641200 accagggaccataatccaaactcgctatatttgcagggactaaaagcatatttta 43641146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 46104400 - 46104346
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||    
T  46104400 accagggacaaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 46104346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 52403126 - 52403180
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  52403126 accagggaccaaaacccaaactcgccatatttgcagggaccaaaagcatatttta 52403180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 52708619 - 52708673
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| |||||||||    
T  52708619 accagagaccaaaacccaaactcgctatatttgcagggaccaaaagcatatttta 52708673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 3416552 - 3416491
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaa 241  Q
    |||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||| ||||||    
T  3416552 accagggaccaaaaaccaaacttgctatatttacagggatcaaaatcatattttagccttaa 3416491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 20489360 - 20489414
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||  ||||||||||||||||||| |||||||||    
T  20489360 accagggaccaaaacccaaactcgtcatatttgcagggaccaaaaacatatttta 20489414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 45267362 - 45267308
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||    
T  45267362 accagggaccaaaactcaaactcgctatatttgcagggatcaaaaacatatttta 45267308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 47433811 - 47433865
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  47433811 accagggaccaaaactcaaattcgctatatttgcagggaccaaaaccatatttta 47433865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 48033115 - 48033061
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||    
T  48033115 accagggaccaaaatccaaactcaccatatttgcaaggaccaaaaacatatttta 48033061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 48035734 - 48035788
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||  ||||||||||||| ||||| |||||||||    
T  48035734 accagggaccaaaatccaaactcgtcatatttgcagggatcaaaaacatatttta 48035788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 42446577 - 42446529
Alignment:
Q  186 gaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||||    
T  42446577 gaccaaaacccaaactcgccatatttgcagggaccaaaagcatatttta 42446529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 38232272 - 38232233
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  38232272 atatttgcagggaccaaaatcatattttagccttaatttt 38232233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 54437472 - 54437523
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  54437472 agggaccaaaactcaaattcgctatatttgcagggaccaaaaacatatttta 54437523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 4705738 - 4705684
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| | |||||||| ||||||||||||| ||||| |||||||||    
T  4705738 accagggaccaaaacctaaactcgccatatttgcagggatcaaaagcatatttta 4705684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 20488423 - 20488369
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||| || | ||||||||||||||||||| |||||||||    
T  20488423 accagggaccaaaacccaaattcaccatatttgcagggaccaaaaacatatttta 20488369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 32637190 - 32637244
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| ||||||| |||||||||||| |||| |||||||||||| |||||||||    
T  32637190 accaggaaccaaaacccaaactcgctacatttacagggaccaaaagcatatttta 32637244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 45268572 - 45268626
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||||| ||||||||||||||||  |||| |||||||||    
T  45268572 accagggaccaaaacccaaacttgctatatttgcagggattaaaaacatatttta 45268626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 32635651 - 32635590
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaa 241  Q
    |||||||||||||| ||||||||||||||||| || |||| ||||  |||||||| ||||||    
T  32635651 accagggaccaaaacccaaactcgctatatttacaaggacaaaaaatatattttagccttaa 32635590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 977848 - 977900
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    |||| ||||||||| |||||||||  ||||||||||||||||||| |||||||    
T  977848 accaaggaccaaaacccaaactcgtcatatttgcagggaccaaaagcatattt 977900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 52707591 - 52707539
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||  |||| |||||||||||||| ||||||||| |||||||||    
T  52707591 cagggaccaaaactcaaattcgctatatttgcaaggaccaaaaacatatttta 52707539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 53122473 - 53122537
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaattt 244  Q
    ||||||||||||||   | |||| |||||||||||||||| |||| ||||||||| |||||||||    
T  53122473 accagggaccaaaacttacactctctatatttgcagggactaaaagcatattttagccttaattt 53122537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 37845455 - 37845408
Alignment:
Q  187 accaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| ||||||| |||||||||||| |||||||| |||||||||    
T  37845455 accaaaatacaaactcactatatttgcagagaccaaaaacatatttta 37845408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 38505585 - 38505644
Alignment:
Q  184 gggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatt 243  Q
    ||||||||||  ||||||||| ||||||||||||| ||||| ||||||||| ||| ||||    
T  38505585 gggaccaaaactcaaactcgccatatttgcagggagcaaaagcatattttagcctaaatt 38505644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 45320948 - 45320987
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    |||||||||||||| |||||||||||||| ||||||||||    
T  45320948 atatttgcagggactaaaatcatattttagccttaatttt 45320987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 15782256 - 15782218
Alignment:
Q  196 caaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  15782256 caaactcgctatatttgcagggaccaaaaatatatttta 15782218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 50563813 - 50563867
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||| |||||||||||||||||| ||||||| ||| ||| |||| |||||||||    
T  50563813 accagcgaccaaaatccaaactcgttatattttcagagactaaaaacatatttta 50563867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 55346318 - 55346368
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatat 230  Q
    ||||||||||||||| ||||||||||||||||| || ||| |||| |||||    
T  55346318 accagggaccaaaattcaaactcgctatatttgtagagactaaaagcatat 55346368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 11914835 - 11914888
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttt 233  Q
    |||||| ||||||| ||||| ||||||||||||||||||| |||| || |||||    
T  11914835 accaggcaccaaaacccaaattcgctatatttgcagggactaaaagcacatttt 11914888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 32119553 - 32119586
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  32119553 atatttgcagggaccaaaatcatattttagcctt 32119586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 35177286 - 35177253
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  35177286 atatttgcagggaccaaaatcatattttagcctt 35177253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 47114518 - 47114485
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  47114518 atatttgcagggaccaaaatcatattttagcctt 47114485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 7957195 - 7957223
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  7957195 atatttgcagggaccaaaatcatatttta 7957223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 9261820 - 9261792
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  9261820 atatttgcagggaccaaaatcatatttta 9261792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 29678356 - 29678384
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  29678356 atatttgcagggaccaaaatcatatttta 29678384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 40370316 - 40370288
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  40370316 atatttgcagggaccaaaatcatatttta 40370288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 40545808 - 40545836
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  40545808 atatttgcagggaccaaaatcatatttta 40545836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 42444079 - 42444035
Alignment:
Q  195 ccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||| || ||||||||||||||||||| ||||||||| ||||    
T  42444079 ccaaacttgccatatttgcagggaccaaaaacatattttaacctt 42444035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 25979253 - 25979318
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  25979253 accagggaccaaaacccaaattcgctatatttgcagggaccaaaaacatattttagccttaatttt 25979318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 1777526 - 1777462
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaattt 244  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||| ||||    
T  1777526 accagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatattttagcctttattt 1777462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 2412430 - 2412484
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||    
T  2412430 accagggactaaaacccaaactcgctatatttgcagggaccaaaaacatatttta 2412484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 23861809 - 23861755
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||    
T  23861809 accagggaccaaaatccaaactctccatatttgcagggaccaaaaacatatttta 23861755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 25977927 - 25977873
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  25977927 accagggaccaaaacccaaactcactatatttgcagggaccaaaaacatatttta 25977873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 11087106 - 11087052
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||    
T  11087106 accaaggaccaaaagccaaactcgctatatttgcagggattaaaatcatatttta 11087052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 36837780 - 36837834
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||  ||||||||    
T  36837780 accagggaccaaaacccaaactcgctatatttgcagagaccaaaaatatatttta 36837834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 1778792 - 1778846
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||||||||| ||||| |||||||||||||||| ||||||| |||||||||    
T  1778792 accaaggaccaaaacccaaagtcgctatatttgcaggaaccaaaagcatatttta 1778846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 3924877 - 3924931
Alignment:
Q  189 caaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatt 243  Q
    |||||||||||||||| ||||||||| ||| ||||| ||||||||| ||||||||    
T  3924877 caaaatccaaactcgccatatttgcaaggagcaaaagcatattttagccttaatt 3924931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 4038899 - 4038845
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| |||||||||||||||  |||||||| |||||| |||||||||||||||    
T  4038899 accaggtaccaaaatccaaacttactatatttacagggatcaaaatcatatttta 4038845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 4040218 - 4040272
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| ||||| | ||| || |||||||||||||||||||||||||||||||    
T  4040218 accagggagcaaaacctaaattctctatatttgcagggaccaaaatcatatttta 4040272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 8810705 - 8810759
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||  |||||||||| ||||||||||||||| |||||||| |||||||||    
T  8810705 accagggattaaaatccaaattcgctatatttgcagagaccaaaaacatatttta 8810759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 8809654 - 8809594
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgc-agggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| ||||| ||| ||||||||| ||||||||||| ||||||||| ||||    
T  8809654 accagggaccaaaacccaaattcgttatatttgcaagggaccaaaaacatattttagcctt 8809594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 30843701 - 30843641
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctta 240  Q
    |||||||||||||| ||||||||| ||||||||||| ||  |||| ||||||||| |||||    
T  30843701 accagggaccaaaacccaaactcgttatatttgcagtgattaaaagcatattttagcctta 30843641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 40125258 - 40125293
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaa 241  Q
    ||||||||||||||||||||||||||||| ||||||    
T  40125258 atatttgcagggaccaaaatcatattttagccttaa 40125293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 24754175 - 24754221
Alignment:
Q  195 ccaaactcgctatatttgcagggaccaaaatcatattttatccttaa 241  Q
    ||||| |||| ||||||||||||||||||| ||||||||| ||||||    
T  24754175 ccaaattcgccatatttgcagggaccaaaaacatattttaaccttaa 24754221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 25283274 - 25283328
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| |||||  |||| ||||||||||||||| |||||||| |||||||||    
T  25283274 accagggatcaaaactcaaattcgctatatttgcagtgaccaaaaacatatttta 25283328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 43672287 - 43672325
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaattt 244  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  43672287 atatttgcagggaccaaaatcatattttagcctttattt 43672325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 3172051 - 3172018
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  3172051 atatttgcagggaccaaaatcatattttagcctt 3172018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 15842792 - 15842828
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaat 242  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  15842792 atatttgcagggaccaaaaccatattttagccttaat 15842828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 25299776 - 25299748
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  25299776 atatttgcagggaccaaaatcatatttta 25299748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 29794321 - 29794372
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||  |||| |||||||||||||||||||||||| |||||||||    
T  29794321 caggaaccaaaactcaaattcgctatatttgcagggaccaaaa-catatttta 29794372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 30215816 - 30215868
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||| |||| | |||| || |||||||||||||||||||| |||||||||    
T  30215816 cagggactaaaaccaaaacgcgatatatttgcagggaccaaaaccatatttta 30215868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 34317829 - 34317801
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  34317829 atatttgcagggaccaaaatcatatttta 34317801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 38231486 - 38231434
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||| |||||| ||||  | |||||||||||||| |||||||||||||||    
T  38231486 cagggactaaaatcaaaacaaggtatatttgcagggatcaaaatcatatttta 38231434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 43824217 - 43824161
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||  |||| | ||||||||||||||||| |||| ||||||||| ||||    
T  43824217 agggaccaaaactcaaatttgctatatttgcagggacgaaaaacatattttaacctt 43824161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 34911833 - 34911889
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34911833 agggatcaaaatccaaactcgctatatttgcagggaccaaaatcatattttagcctt 34911889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 3936635 - 3936576
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||    
T  3936635 accagggaccaaaacccaaactcgctatatttgcagggaccaaaaacatattttagcctt 3936576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 27571131 - 27571190
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  27571131 accagggatcaaaacccaaactcgctatatttgcagggaccaaaatcatattttagcctt 27571190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 4565450 - 4565396
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||||||||||| |||||| |||| |||||||||    
T  4565450 accagggaccaaaacccaaactcgctatatttgtagggactaaaaacatatttta 4565396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 27570109 - 27570059
Alignment:
Q  184 gggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||||||    
T  27570109 gggaacaaaacccaaactcgctatatttgcaaggaccaaaatcatatttta 27570059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 14809217 - 14809166
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||| |||||||||||| ||||| ||||| |||||||||    
T  14809217 agggaccaaaatccaaattcgctatatttgtagggatcaaaaacatatttta 14809166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 3938062 - 3938116
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| | ||||| ||||||||||||||||| |||| |||||||||    
T  3938062 accagggaccaaaacctaaacttgctatatttgcagggactaaaagcatatttta 3938116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 3954109 - 3954055
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||| ||| |||||||||| ||||||||| |||||||||    
T  3954109 accagggaccaaaacccaaattcgatatatttgcaaggaccaaaaacatatttta 3954055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 31540553 - 31540499
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| ||||||| ||||| ||| |||||||||||||||||||| |||||||||    
T  31540553 accaggtaccaaaacccaaattcgttatatttgcagggaccaaaaacatatttta 31540499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 4777697 - 4777645
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    ||||||||||||||||||||||  ||||||||||| |||| |||| |||||||    
T  4777697 accagggaccaaaatccaaacttactatatttgcaaggactaaaagcatattt 4777645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 3205104 - 3205158
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||||||   ||||||||||||| ||||| |||||||||    
T  3205104 accagggaccaaaacccaaactcatcatatttgcagggatcaaaagcatatttta 3205158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 6894012 - 6894066
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| | |||||||  ||||||||| ||||||||| |||||||||    
T  6894012 accagggaccaaaacctaaactcgtcatatttgcaaggaccaaaaacatatttta 6894066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 15599818 - 15599768
Alignment:
Q  184 gggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||| ||||| |||| ||||||| ||||||||||| |||||||||    
T  15599818 gggaccaaaacccaaattcgccatatttgtagggaccaaaagcatatttta 15599768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 25254133 - 25254187
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| |||||  |||||||  |||||||||||||||||||| |||||||||    
T  25254133 accagggatcaaaactcaaactctatatatttgcagggaccaaaagcatatttta 25254187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 25317923 - 25317977
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||| |||||  |||||||  |||||||||||||||||||| |||||||||    
T  25317923 accagggatcaaaactcaaactctatatatttgcagggaccaaaagcatatttta 25317977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 5917429 - 5917466
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatt 243  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  5917429 atatttgcagggaccaaaaccatattttagccttaatt 5917466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 242
Target Start/End: Original strand, 1381580 - 1381616
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaat 242  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  1381580 atatttgcagggaccaaaaccatattttagccttaat 1381616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 6244410 - 6244438
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  6244410 atatttgcagggaccaaaatcatatttta 6244438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 28871668 - 28871640
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  28871668 atatttgcagggaccaaaatcatatttta 28871640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 40038827 - 40038855
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  40038827 atatttgcagggaccaaaatcatatttta 40038855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 42553673 - 42553645
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  42553673 atatttgcagggaccaaaatcatatttta 42553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0562 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0562
Description:

Target: scaffold0562; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 9979 - 9925
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  9979 accagggaccaaaatccaaactcgctatatttgcagggatcaaaagcatatttta 9925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 433 - 487
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  433 accagggaccaaaacccaaactcactatatttgcagggaccaaaatcatatttta 487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 10717178 - 10717124
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  10717178 accagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatatttta 10717124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 10718450 - 10718504
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  10718450 accagggaccaaaacccaaactcgctatatttgcagggaccaaaagcatatttta 10718504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 28996891 - 28996837
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  28996891 accagggaccaaaacccaaactcactatatttgcagggaccaaaatcatatttta 28996837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 1376992 - 1376940
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  1376992 accagggaccaaaatccaaattggctatatttgcagggaccaaaatcatattt 1376940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 1420446 - 1420498
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  1420446 cagggaccaatatccaaactcgctatatttgcagggaccaaaaacatatttta 1420498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 14197879 - 14197823
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  14197879 agggaccaaaatccaaactcgccatatttgcagggaccaaaaacatattttagcctt 14197823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 22534724 - 22534783
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| ||||    
T  22534724 accagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatattttagcctt 22534783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 28997998 - 28998049
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  28997998 agggaccaaaacccaaactcgctatatttgcagggaccaaaaacatatttta 28998049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 36588279 - 36588220
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| ||||    
T  36588279 accagggaccaaaacgcaaactcgctatatttgcagggaccaaaagcatattttagcctt 36588220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 45517962 - 45518016
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||    
T  45517962 accagggaccaaaacccaaactcgctatacttgcagggaccaaaagcatatttta 45518016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 1385557 - 1385609
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    |||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  1385557 accagggaccaaaatccaaattggctatatttgcagggaccaaaaccatattt 1385609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 3483688 - 3483636
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  3483688 cagggaccaaaactcaaactcgctatatttgcagggaccaaaaacatatttta 3483636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 22272272 - 22272332
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctta 240  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||| |||||    
T  22272272 accagggaccaaaacccaaattcgctatatttgcggggaccaaaagcatattttagcctta 22272332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 22533374 - 22533315
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| ||||||||||||||| | |||||||||||| ||||||||| ||||    
T  22533374 accagggaccaaaacccaaactcgctatatatacagggaccaaaagcatattttagcctt 22533315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 4182679 - 4182625
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||| ||||||||||| |||||||||||| |||||||||    
T  4182679 accagggaccaaaacccaaattcgctatatttacagggaccaaaagcatatttta 4182625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 22271000 - 22270946
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||| |||||||||| |||||||||||||||||| ||||| |||||||||    
T  22271000 accagggactaaaatccaaattcgctatatttgcagggatcaaaagcatatttta 22270946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 36589389 - 36589448
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||| ||||||||| | |||||||||||||||||||| || |||||||||||||| ||||    
T  36589389 accaaggaccaaaacctaaactcgctatatttgcaggaactaaaatcatattttagcctt 36589448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 39439981 - 39439922
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||| ||||||  |||||| || ||||||||||||||||||||||||||||| ||||    
T  39439981 accagggtccaaaactcaaactagccatatttgcagggaccaaaatcatattttagcctt 39439922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 4183981 - 4184035
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||| | |||||||||||||||| |||| |||||||||    
T  4183981 accagggaccaaaacccaaacgcactatatttgcagggactaaaagcatatttta 4184035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 30124225 - 30124279
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||  |||||| ||| |||||||||||||||||| |||||||||    
T  30124225 accagggaccaaaactcaaacttgctttatttgcagggaccaaaagcatatttta 30124279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 38456732 - 38456786
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| | ||| | |||||||||||||||||||||| |||||||||    
T  38456732 accagggaccaaaacctaaatttgctatatttgcagggaccaaaagcatatttta 38456786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 38658538 - 38658484
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||| |||||||||||||| |||||| || |||||||||    
T  38658538 accagggaccaaaacccaaattcgctatatttgcatggaccagaagcatatttta 38658484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 41846704 - 41846639
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    ||||| ||||||||||||||||  |||||||| ||||||| |||| ||||||||| |||| |||||    
T  41846704 accagagaccaaaatccaaacttactatatttacagggactaaaagcatattttaaccttcatttt 41846639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 34904511 - 34904563
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    |||||| ||||||| ||||| |||||||||||| |||||| ||||||||||||    
T  34904511 accaggaaccaaaacccaaattcgctatatttgaagggactaaaatcatattt 34904563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 39440426 - 39440478
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||  ||||||||| ||||||||| ||||||||| |||||||||    
T  39440426 cagggaccaaaactcaaactcgccatatttgcaaggaccaaaagcatatttta 39440478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 10292857 - 10292814
Alignment:
Q  196 caaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||    
T  10292857 caaattcgctatatttgaagggaccaaaatcatattttagcctt 10292814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 11019551 - 11019512
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  11019551 atatttgcagggaccaaaaccatattttagccttaatttt 11019512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 28346425 - 28346386
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  28346425 atatttgcagggaccaaaaccatattttagccttaatttt 28346386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 44997962 - 44997923
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatttt 245  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  44997962 atatttgcagggaccaaaatcatattttagcctttatttt 44997923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 235
Target Start/End: Original strand, 3484806 - 3484844
Alignment:
Q  197 aaactcgctatatttgcagggaccaaaatcatattttat 235  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  3484806 aaactcgctatatttgcaggaaccaaaagcatattttat 3484844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 41354528 - 41354474
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| |||||||| ||||||||||||||||  | ||||||||| |||||||||    
T  41354528 accaggaaccaaaattcaaactcgctatatttataaggaccaaaaacatatttta 41354474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 2728263 - 2728230
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  2728263 atatttgcagggaccaaaatcatattttagcctt 2728230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 28497286 - 28497253
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  28497286 atatttgcagggaccaaaatcatattttagcctt 28497253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 28497588 - 28497617
Alignment:
Q  206 atatttgcagggaccaaaatcatattttat 235  Q
    ||||||||||||||||||||||||||||||    
T  28497588 atatttgcagggaccaaaatcatattttat 28497617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 5357454 - 5357426
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  5357454 atatttgcagggaccaaaatcatatttta 5357426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 5357732 - 5357760
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  5357732 atatttgcagggaccaaaatcatatttta 5357760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 41847184 - 41847236
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||  |||| ||||||||||||||| ||| |||| |||||||||    
T  41847184 cagggaccaaaactcaaattcgctatatttgcagagactaaaagcatatttta 41847236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 18810589 - 18810535
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  18810589 accagggaccaaaacccaaactcactatatttgcagggaccaaaatcatatttta 18810535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 21953263 - 21953209
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  21953263 accagggaccaaaatccaaattcgctatatttgcagggaccaaaagcatatttta 21953209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 21165303 - 21165249
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  21165303 accagggaccaaaacacaaactcgctatatttgcagggaccaaaagcatatttta 21165249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 34998143 - 34998197
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||    
T  34998143 accagggaccaaaacccaaactcgctatatttgcagggatcaaaagcatatttta 34998197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 234
Target Start/End: Original strand, 20897469 - 20897553
Alignment:
Q  150 ttttgcagggatggatttcaannnnnnnnnaccagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||         |||||||||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  20897469 ttttgcagggatggatttcaatttttttttaccagggaccaaaacccaaattcactatatttgcagggaccaaaaccatatttta 20897553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 3276421 - 3276370
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| |||||||||| |||||||||||||||||||||||| |||||||||    
T  3276421 agggactaaaatccaaattcgctatatttgcagggaccaaaaacatatttta 3276370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 3279501 - 3279560
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||| ||||||||| ||||    
T  3279501 accaggaaccaaaattcaaactcgctatatttgcagggatcaaaaacatattttaacctt 3279560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 17517311 - 17517365
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||| |||||||||    
T  17517311 accagggaccaaaactcaaactcgccatatttgcagggaccaaaaacatatttta 17517365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 1171655 - 1171712
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||| ||||||||| |||||||||||||| ||||| ||||||||| ||||    
T  1171655 cagggaccaaaaaccaaactcgttatatttgcagggatcaaaaacatattttaacctt 1171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 17516217 - 17516165
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||| |||||||| | ||||||||||||||||||| |||||||||    
T  17516217 cagggaccaaaacccaaactcaccatatttgcagggaccaaaaacatatttta 17516165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 20391268 - 20391212
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||| ||||| || ||||||||||||||||||||| ||||||||| ||||    
T  20391268 agggaccaaaacccaaattcactatatttgcagggaccaaaagcatattttaacctt 20391212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 29291414 - 29291362
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||| |||||||||| ||||||||| ||||||||| |||||||||    
T  29291414 cagggaccaaaacccaaactcgccatatttgcaaggaccaaaagcatatttta 29291362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 16995508 - 16995449
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctt 239  Q
    |||||||||||||| ||||| ||  |||||||||||||||||||| ||||||||| ||||    
T  16995508 accagggaccaaaacccaaattctttatatttgcagggaccaaaaacatattttagcctt 16995449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 6412548 - 6412592
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaattttcttaa 250  Q
    ||||||||||||||||||| ||||||||| |||||||||| ||||    
T  6412548 atatttgcagggaccaaaaccatattttagccttaattttattaa 6412592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 17000281 - 17000333
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||| |||||||| ||| |||||||||||||||||  ||||||||    
T  17000281 cagggaccaaaacccaaactcactacatttgcagggaccaaaagtatatttta 17000333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 1972457 - 1972403
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||| ||| |||| ||||| ||||| |||||||||||||||||| |||||||||    
T  1972457 accagagactaaaacccaaattcgctttatttgcagggaccaaaaacatatttta 1972403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 20393270 - 20393324
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||  ||| ||||| |||||||||||||||||| ||||| |||||||||    
T  20393270 accagggactgaaacccaaattcgctatatttgcagggatcaaaagcatatttta 20393324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 20895999 - 20895961
Alignment:
Q  196 caaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  20895999 caaattcgctatatttgcagggaccaaaaacatatttta 20895961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 25440675 - 25440729
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||| ||||||||| ||||||| | |||||||||  ||||||||    
T  25440675 accagggaccaaaattcaaactcgccatatttgtaaggaccaaaaatatatttta 25440729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 34995171 - 34995117
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||| |||||||  |||| |||||||||||||||||| ||||| |||||||||    
T  34995171 accaggaaccaaaactcaaattcgctatatttgcagggatcaaaagcatatttta 34995117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 11448568 - 11448531
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatt 243  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  11448568 atatttgcagggactaaaatcatattttagccttaatt 11448531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 13268140 - 13268103
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatccttaatt 243  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  13268140 atatttgcagggaccaaaaccatattttagccttaatt 13268103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 17765344 - 17765377
Alignment:
Q  206 atatttgcagggaccaaaatcatattttatcctt 239  Q
    ||||||||||||||||||||||||||||| ||||    
T  17765344 atatttgcagggaccaaaatcatattttagcctt 17765377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 1974156 - 1974208
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||  |||| |||||||||||||| ||| ||||| |||||||||    
T  1974156 cagggaccaaaactcaaattcgctatatttgcaaggatcaaaaacatatttta 1974208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 19129489 - 19129517
Alignment:
Q  206 atatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||||||||    
T  19129489 atatttgcagggaccaaaatcatatttta 19129517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 26419570 - 26419526
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaa 224  Q
    |||||||||||||| ||||||| | |||||||| |||||||||||    
T  26419570 accagggaccaaaacccaaacttgttatatttgtagggaccaaaa 26419526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 30253547 - 30253595
Alignment:
Q  186 gaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||  || ||||||| |||||||||||||||||| |||||||||    
T  30253547 gaccaaaactcatactcgctgtatttgcagggaccaaaaacatatttta 30253595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 344994 - 344942
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattt 232  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  344994 accagggaccaaaacccaaactcgccatatttgcagggaccaaaatcatattt 344942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 374389 - 374338
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  374389 agggaccaaaacccaaactcgctatatttgcagggatcaaaatcatatttta 374338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 345902 - 345953
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  345902 agggaccaaaacccaaattcgctatatttgcagggaccaaaaacatatttta 345953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 234
Target Start/End: Original strand, 376381 - 376425
Alignment:
Q  190 aaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  376381 aaaacccaaactcgctatatttgcagggaccaaaagcatatttta 376425  T

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Target: scaffold0516 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 1019 - 1089
Alignment:
Q  64 ttacatagtcagatactgccacataggtagaaatgcaccaaaacatcaataaagtggggccaaggacaatt 134  Q
    ||||||||||||  | ||||||||||| |||||||  ||||| ||||||||||||||||||||||||||||    
T  1019 ttacatagtcagcgaatgccacataggcagaaatgtgccaaatcatcaataaagtggggccaaggacaatt 1089  T

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Target: scaffold0106 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 29786 - 29732
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||||||| | |||||||||||||||||| |||||||||    
T  29786 accagggaccaaaatccaaactcgttttatttgcagggaccaaaagcatatttta 29732  T

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Target: scaffold0106; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 30909 - 30963
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  30909 accagggaccaaaacccaaactcactatatttgcagggaccaaaaccatatttta 30963  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 202632 - 202582
Alignment:
Q  184 gggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  202632 gggaccaaaatccaaactcgttatatttgcagggaccaaaagcatatttta 202582  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 120987 - 121041
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||||||||||||| ||||||||| |||||||||||||||||||| |||||||||    
T  120987 accagggaccaaaacccaaactcgttatatttgcagggaccaaaagcatatttta 121041  T

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Target: scaffold0001; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 119650 - 119596
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  119650 accagggaccaaaactcaaattcgctatatttgcagggaccaaaagcatatttta 119596  T

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Target: scaffold0517 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 11524 - 11584
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatattttatcctta 240  Q
    |||||||||||||| |||||  ||||||||||||||||||||||| ||||||||| |||||    
T  11524 accagggaccaaaacccaaatacgctatatttgcagggaccaaaaacatattttagcctta 11584  T

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Target: scaffold0517; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 10372 - 10318
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    |||| |||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  10372 accaaggaccaaaactcaaattcgctatatttgcagggaccaaaagcatatttta 10318  T

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Target: scaffold0765 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0765
Description:

Target: scaffold0765; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 1914 - 1863
Alignment:
Q  183 agggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||||||    
T  1914 agggatcaaaactcaaactcgctatatttgcagggaccaaaatcatatttta 1863  T

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Target: scaffold0095 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 234
Target Start/End: Original strand, 42759 - 42811
Alignment:
Q  182 cagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||  ||||||||| ||||||||| ||||||||| |||||||||    
T  42759 cagggaccaaaactcaaactcgccatatttgcaaggaccaaaagcatatttta 42811  T

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Target: scaffold0599 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 6586 - 6639
Alignment:
Q  180 accagggaccaaaatccaaactcgctatatttgcagggaccaaaatcatatttt 233  Q
    |||||| ||||||| ||||| ||||||||||||||||||| |||| || |||||    
T  6586 accaggcaccaaaacccaaattcgctatatttgcagggactaaaagcacatttt 6639  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 16756 - 16727
Alignment:
Q  205 tatatttgcagggaccaaaatcatatttta 234  Q
    ||||||||||||||||||||||||||||||    
T  16756 tatatttgcagggaccaaaatcatatttta 16727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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