View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3016_low_14 (Length: 247)
Name: NF3016_low_14
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3016_low_14 |
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| [»] scaffold0651 (2 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 8180 - 8406
Alignment:
| Q |
17 |
agcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8180 |
agcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaatgaaggcaacacaacttcacatatg |
8279 |
T |
|
| Q |
117 |
cttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8280 |
cttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttc |
8379 |
T |
|
| Q |
217 |
tttctgtattgtgatcactcttgatca |
243 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
8380 |
tttctgtattgtgatcactcatgatca |
8406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 558 - 354
Alignment:
| Q |
17 |
agcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatg |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||| |||||||||||| |
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| T |
558 |
agcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcagtgaagggaacattacttcacatatg |
459 |
T |
|
| Q |
117 |
cttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttc |
216 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
458 |
cttgtgagtgactccatctcagccacagaaaacccatgtttgtatttgcgattctctctcataccactcaacaatggatgacactctcttctcatctttc |
359 |
T |
|
| Q |
217 |
tttct |
221 |
Q |
| |
|
||||| |
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|
| T |
358 |
tttct |
354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 31315517 - 31315291
Alignment:
| Q |
17 |
agcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31315517 |
agcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttgtaagagcatcatccattggcaatgaaggcaacacaacttcacatatg |
31315418 |
T |
|
| Q |
117 |
cttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31315417 |
cttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttc |
31315318 |
T |
|
| Q |
217 |
tttctgtattgtgatcactcttgatca |
243 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
31315317 |
tttctgtattgtgatcactcatgatca |
31315291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 31330646 - 31330442
Alignment:
| Q |
17 |
agcagagatgttgaagaaagactgcacatccttgcttgattcatcatcttttctaagagcatcatccattggcaatgaaggcaacacaacttcacatatg |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| |||| |||||||||||| |
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| T |
31330646 |
agcagagatgttgaagaaagattgcacatccttgcttgattcatcatcttttgtgagagcatcatccattggcagtgaagggaacattacttcacatatg |
31330547 |
T |
|
| Q |
117 |
cttgtgagtgactccatctcagctacagaaaatccatgtttgtatttgctattctctctcacaccactcaacaatggatgacactctcttctcatctttc |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31330546 |
cttgtgagtgactccatctcagccacagaaaacccatgtttgtatttgcgattctctctcataccactcaacaatggatgacactctcttctcatctttc |
31330447 |
T |
|
| Q |
217 |
tttct |
221 |
Q |
| |
|
||||| |
|
|
| T |
31330446 |
tttct |
31330442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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