View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3016_low_15 (Length: 238)

Name: NF3016_low_15
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3016_low_15
NF3016_low_15
[»] chr1 (4 HSPs)
chr1 (121-213)||(31087444-31087536)
chr1 (1-41)||(31087617-31087657)
chr1 (1-37)||(10296682-10296718)
chr1 (1-37)||(24234627-24234663)
[»] chr4 (3 HSPs)
chr4 (5-41)||(17040100-17040136)
chr4 (1-31)||(30637042-30637072)
chr4 (4-36)||(8358563-8358595)
[»] chr8 (2 HSPs)
chr8 (1-36)||(12649571-12649606)
chr8 (1-34)||(35560844-35560877)
[»] chr2 (2 HSPs)
chr2 (8-41)||(30842153-30842186)
chr2 (1-37)||(29154154-29154190)
[»] chr3 (1 HSPs)
chr3 (1-37)||(2397876-2397912)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 121 - 213
Target Start/End: Complemental strand, 31087536 - 31087444
Alignment:
Q  121 tcattccaattattctgtgttgattaatatgttcaaaatgttgcgacattccacctgtccatgccagagttgtcctaattaactgcttgcaaa 213  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31087536 tcattccaattattctgtgttaattaatatgttcaaaatgttgcgacattccacctgtccatgccagagtggtcctaattaactgcttgcaaa 31087444  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31087657 - 31087617
Alignment:
Q  1 atattagatttgaagcttgaaaatccatatgtaaatgaacc 41  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  31087657 atattagatttgaaacttgaaaatccaaatgtaaatgaacc 31087617  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10296718 - 10296682
Alignment:
Q  1 atattagatttgaagcttgaaaatccatatgtaaatg 37  Q
    |||||||||||||||||||||||| |||||| |||||    
T  10296718 atattagatttgaagcttgaaaatgcatatgaaaatg 10296682  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24234663 - 24234627
Alignment:
Q  1 atattagatttgaagcttgaaaatccatatgtaaatg 37  Q
    |||| |||||||||||||||||||||||||| |||||    
T  24234663 atataagatttgaagcttgaaaatccatatgaaaatg 24234627  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 17040100 - 17040136
Alignment:
Q  5 tagatttgaagcttgaaaatccatatgtaaatgaacc 41  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17040100 tagatttgaagcttgaaaatccatatgcaaatgaacc 17040136  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 30637072 - 30637042
Alignment:
Q  1 atattagatttgaagcttgaaaatccatatg 31  Q
    |||||||||||||||||||||||||||||||    
T  30637072 atattagatttgaagcttgaaaatccatatg 30637042  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 8358563 - 8358595
Alignment:
Q  4 ttagatttgaagcttgaaaatccatatgtaaat 36  Q
    ||||||||||||||||||||| |||||||||||    
T  8358563 ttagatttgaagcttgaaaattcatatgtaaat 8358595  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 12649606 - 12649571
Alignment:
Q  1 atattagatttgaagcttgaaaatccatatgtaaat 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12649606 atattagatttgaagcttgaaaatccatatgaaaat 12649571  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35560844 - 35560877
Alignment:
Q  1 atattagatttgaagcttgaaaatccatatgtaa 34  Q
    |||||||||||||||||| |||||||||||||||    
T  35560844 atattagatttgaagcttaaaaatccatatgtaa 35560877  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 30842186 - 30842153
Alignment:
Q  8 atttgaagcttgaaaatccatatgtaaatgaacc 41  Q
    ||||||||||||||||| ||||||||||||||||    
T  30842186 atttgaagcttgaaaattcatatgtaaatgaacc 30842153  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29154190 - 29154154
Alignment:
Q  1 atattagatttgaagcttgaaaatccatatgtaaatg 37  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  29154190 atattagatttgaagcttgaagatccatatgaaaatg 29154154  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2397912 - 2397876
Alignment:
Q  1 atattagatttgaagcttgaaaatccatatgtaaatg 37  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  2397912 atattagatttgaagtttgaaaatccatatgaaaatg 2397876  T

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