View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3016_low_17 (Length: 236)
Name: NF3016_low_17
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3016_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 1516897 - 1516674
Alignment:
| Q |
7 |
atagattagttaacttactttatttgttttctccgtaaccnnnnnnnntattatttgttttatccacggccaaacctttgacccgtcaagaaaggatgca |
106 |
Q |
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| T |
1516897 |
atagattagttaacttactttatttgttttctccgtaaccaaaaaaaaaat-atttgtcttatccacggccaaacctttgacccgtcaagaaaggatgca |
1516799 |
T |
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| Q |
107 |
ctactatatatacatagctcccaatcttgatttaatttgttcaatatcct-aacatagaggtaaatatagaattaatgatggatagtcttaggcaaacac |
205 |
Q |
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| T |
1516798 |
ctactatatatacatagctcccaatcttgatttaatttgttcaatatcctaaacatagaggtaaatatagaattaatgatggatagtcttaggcaaacac |
1516699 |
T |
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| Q |
206 |
ttgagagttttgcaatggtagcatt |
230 |
Q |
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| T |
1516698 |
ttgggagttttgcaatggtagcatt |
1516674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 1521018 - 1520860
Alignment:
| Q |
75 |
gccaaacctttgacccgtcaagaaaggatgcactactatatata----catagctcccaatcttgatttaatttgttcaatatcctaacatagaggtaaa |
170 |
Q |
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| T |
1521018 |
gccaaacctttgactcctcaagaaagcatgcactactatatatatatacatagc-ctcaatcttgatttaatttgtacaatatcctaacatagaggtaaa |
1520920 |
T |
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| Q |
171 |
tatagaattaatgatggatagtcttaggcaaacacttgagagttttgcaatggtagcatt |
230 |
Q |
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| T |
1520919 |
gaaaaaaataatgatggataatcttaggcaaacccttgggagttttgcaatggtagcatt |
1520860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 168
Target Start/End: Complemental strand, 1525284 - 1525251
Alignment:
| Q |
135 |
gatttaatttgttcaatatcctaacatagaggta |
168 |
Q |
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| T |
1525284 |
gatttaatttgtacaatatcctaacatagaggta |
1525251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 23087101 - 23087134
Alignment:
| Q |
135 |
gatttaatttgttcaatatcctaacatagaggta |
168 |
Q |
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| T |
23087101 |
gatttaatttgtacaatatcctaacatagaggta |
23087134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 103 - 230
Target Start/End: Complemental strand, 16645333 - 16645209
Alignment:
| Q |
103 |
tgcactactatatataca--tagctcccaatcttgatttaatttgttcaatatcctaacatagaggtaaatatagaattaatgatggatagtcttaggca |
200 |
Q |
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|||||||||||||||||| ||| || ||||||||||||| || ||||||||||||||||||||| || | | ||||||||||| || |||||| |
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| T |
16645333 |
tgcactactatatatacacgtaggtcttaatcttgatttaagttcttcaatatcctaacatagaggctaaaaaa-----aatgatggataatcataggca |
16645239 |
T |
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| Q |
201 |
aacacttgagagttttgcaatggtagcatt |
230 |
Q |
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| T |
16645238 |
aacacttgggaattttgcaatggtagcatt |
16645209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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