View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3016_low_19 (Length: 227)

Name: NF3016_low_19
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3016_low_19
NF3016_low_19
[»] chr3 (3 HSPs)
chr3 (6-227)||(17036224-17036445)
chr3 (98-166)||(13996257-13996325)
chr3 (98-227)||(20610052-20610177)
[»] chr8 (3 HSPs)
chr8 (92-227)||(14051262-14051397)
chr8 (109-170)||(39688085-39688146)
chr8 (88-170)||(12336763-12336846)
[»] chr7 (1 HSPs)
chr7 (85-227)||(6770484-6770626)
[»] chr2 (3 HSPs)
chr2 (85-176)||(1542792-1542883)
chr2 (85-221)||(41781427-41781563)
chr2 (85-170)||(24983900-24983983)
[»] chr6 (1 HSPs)
chr6 (114-176)||(4231484-4231546)
[»] chr5 (2 HSPs)
chr5 (85-170)||(37394877-37394962)
chr5 (93-227)||(42614953-42615088)
[»] scaffold0092 (1 HSPs)
scaffold0092 (85-227)||(46303-46443)
[»] chr4 (1 HSPs)
chr4 (85-170)||(13968314-13968397)
[»] chr1 (2 HSPs)
chr1 (182-227)||(26273630-26273675)
chr1 (85-117)||(42817782-42817814)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 17036445 - 17036224
Alignment:
Q  6 agtttttgcgaaacaatgatgaaactgtgagtagtgtttcattgatgaatctaaattcattcactcaaaactttgagct--agccaggaatttcatagag 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |    |||||| ||||| ||||||    
T  17036445 agtttttgcgaaacaatgatgaaactgtgagtagtgtttcattgatgaatctaaattcattcactaaaaactatgtggcggagccagaaattttatagag 17036346  T
Q  104 tctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaattttttgtgtgttttaagttggctaataggcta 203  Q
     |||  |||||||||||||| ||| |||| || |  ||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||    
T  17036345 cctga-caaaaattatagaggcaggaattcttatacgcgcgcgtgtgaaaatattgagtttgcccaatttttt-tgtgttttaagtgggttaataggcta 17036248  T
Q  204 ttgggttgggccaaatataaagaa 227  Q
    ||||||||| | ||||||||||||    
T  17036247 ttgggttggccgaaatataaagaa 17036224  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 13996257 - 13996325
Alignment:
Q  98 atagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgc 166  Q
    |||||| |||| ||||||||||||||| |  |||| ||| |||||||||||||||||| ||||||||||    
T  13996257 atagagcctggacaaaaattatagagctaagaattcttgcgtgcgcgcgtgtgaaaatgttgagtttgc 13996325  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 20610177 - 20610052
Alignment:
Q  98 atagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaattttttgtgtgttttaagttggctaat 197  Q
    |||||| ||||||||||||||  ||| ||| ||||||||||  ||| | | |||||||||||||||||||||||||||  |   |||||||| || ||||    
T  20610177 atagagcctgggcaaaaatta--gagtcaggaatttttgtg--cgcacatatgaaaatattgagtttgcccaatttttatttatttttaagtgggttaat 20610082  T
Q  198 aggctattgggttgggccaaatataaagaa 227  Q
     |||||||||| ||  | ||||||||||||    
T  20610081 gggctattgggctgaacaaaatataaagaa 20610052  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 14051397 - 14051262
Alignment:
Q  92 aatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaattttttgtgtgttttaagttg 191  Q
    ||||| ||| ||||| |||||||||||||||||||| |||| || || | ||||||||||||||||||||||||||||||||||  | | |||||||| |    
T  14051397 aattttataaagtctaggcaaaaattatagagccaggaattattatgcgtgcgcgtgtgaaaatattgagtttgcccaatttttattttattttaagtgg 14051298  T
Q  192 gctaataggctattgggttgggccaaatataaagaa 227  Q
      |||| ||||||| |||||||||||||||||||||    
T  14051297 cttaatgggctattaggttgggccaaatataaagaa 14051262  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 39688085 - 39688146
Alignment:
Q  109 gcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaa 170  Q
    ||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||    
T  39688085 gcaaaaattatagagccaagaatttttgtgtgcgtgcgtgtgaaaatattgagtttgcccaa 39688146  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 12336846 - 12336763
Alignment:
Q  88 caggaatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtg-aaaatattgagtttgcccaa 170  Q
    ||||||||| ||||||  || |||||||| || ||||||| |||| ||||| | ||||||||| ||||||||||||||||||||    
T  12336846 caggaattttatagagcatgtgcaaaaataatggagccaggaattcttgtgcgtgcgcgtgtgaaaaatattgagtttgcccaa 12336763  T

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Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 85 - 227
Target Start/End: Complemental strand, 6770626 - 6770484
Alignment:
Q  85 agccaggaatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaattttttgtgtgttt 184  Q
    |||||||||||| ||||||| ||||||||| |||||||||||  |||| ||||| | ||||||||||||||||||||||||||||||||| | | | |||    
T  6770626 agccaggaattttatagagtttgggcaaaatttatagagccataaattcttgtgcgtgcgcgtgtgaaaatattgagtttgcccaattttgtattttttt 6770527  T
Q  185 taagttggctaataggctattgggttgggccaaatataaagaa 227  Q
    ||||| || |||| |||||||  ||||||  ||||||||||||    
T  6770526 taagtgggttaatgggctatttagttgggaaaaatataaagaa 6770484  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 1542883 - 1542792
Alignment:
Q  85 agccaggaatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaatttttt 176  Q
    |||||||||||| |||||| |||||||||||||| |||| ||  |||| ||||| ||||||||||||||||||||||||||||||| |||||    
T  1542883 agccaggaattttatagagcctgggcaaaaattaaagagtcaagaattcttgtgcgcgcgcgtgtgaaaatattgagtttgcccaaattttt 1542792  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 221
Target Start/End: Complemental strand, 41781563 - 41781427
Alignment:
Q  85 agccaggaatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaattttttgtgtgttt 184  Q
    |||||||||||| ||||| ||||| |||||||||||||| ||  |||| |||||  ||| |||| ||||||||||||||||||||||||||  |   |||    
T  41781563 agccaggaattttatagaatctggacaaaaattatagagtcaagaattattgtgcacgcacgtgcgaaaatattgagtttgcccaatttttatttatttt 41781464  T
Q  185 taagttggctaataggctattgggttgggccaaatat 221  Q
    | ||| || |||| | |||||||||||||| ||||||    
T  41781463 tgagtgggttaatggactattgggttgggcgaaatat 41781427  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 24983983 - 24983900
Alignment:
Q  85 agccaggaatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaa 170  Q
    |||||||||||| ||||||||||||||||||||| || |  |  |||| ||||| |||||| ||||||||||||||||||||||||    
T  24983983 agccaggaattttatagagtctgggcaaaaattagagtg--aagaattcttgtgcgcgcgcatgtgaaaatattgagtttgcccaa 24983900  T

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Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 4231484 - 4231546
Alignment:
Q  114 aattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaatttttt 176  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  4231484 aattatagagccagaaattcttgtgtgcgcgcgtgtgaaaatattgagtttgcccaatttttt 4231546  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 37394962 - 37394877
Alignment:
Q  85 agccaggaatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaa 170  Q
    |||||| ||||| |||||||||| ||||||||||||||| ||  |||| ||||| | |||| ||| ||||||||||||||||||||    
T  37394962 agccagaaattttatagagtctgagcaaaaattatagagtcaagaattcttgtgcgggcgcatgtaaaaatattgagtttgcccaa 37394877  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 42614953 - 42615088
Alignment:
Q  93 atttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgag-tttgcccaattttttgtgtgttttaagttg 191  Q
    |||| |||||||  || |||||| ||||||| ||  |||| ||||| |||||||||||||||||||||| |||  |||||||| | | | |||||||| |    
T  42614953 attttatagagtacggacaaaaaatatagagtcaagaattcttgtgcgcgcgcgtgtgaaaatattgagttttttccaattttatatattttttaagtgg 42615052  T
Q  192 gctaataggctattgggttgggccaaatataaagaa 227  Q
      |||| | |||||||||||  ||||||||||||||    
T  42615053 attaatggactattgggttgaaccaaatataaagaa 42615088  T

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Target: scaffold0092 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 46303 - 46443
Alignment:
Q  85 agccaggaatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaattttttgtgtgttt 184  Q
    |||||| ||||| |||||| ||  | |||||||||| |||||| |||| || ||  ||||||||| ||||||||||||||| |||||||||  | | |||    
T  46303 agccagaaattttatagagcctaagtaaaaattataaagccaggaattcttatgctcgcgcgtgtaaaaatattgagtttgtccaattttt--tattttt 46400  T
Q  185 taagttggctaataggctattgggttgggccaaatataaagaa 227  Q
    ||||| || ||||   ||||| |||||||| ||||||||||||    
T  46401 taagtgggttaatgaactatttggttgggcaaaatataaagaa 46443  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 13968397 - 13968314
Alignment:
Q  85 agccaggaatttcatagagtctgggcaaaaattatagagccagtaatttttgtgtgcgcgcgtgtgaaaatattgagtttgcccaa 170  Q
    |||||||||||| |||||||||| ||||||||||  ||| ||  |||| |||||   |||| ||||||||||||||||||||||||    
T  13968397 agccaggaattttatagagtctgagcaaaaatta--gagtcaagaattcttgtgctggcgcatgtgaaaatattgagtttgcccaa 13968314  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 26273630 - 26273675
Alignment:
Q  182 ttttaagttggctaataggctattgggttgggccaaatataaagaa 227  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||    
T  26273630 ttttaagttggttaattggctattgggttgggccatatataaagaa 26273675  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 42817814 - 42817782
Alignment:
Q  85 agccaggaatttcatagagtctgggcaaaaatt 117  Q
    |||||||||||| ||||||||||||||||||||    
T  42817814 agccaggaattttatagagtctgggcaaaaatt 42817782  T

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