View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3016_low_2 (Length: 628)

Name: NF3016_low_2
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3016_low_2
NF3016_low_2
[»] chr2 (2 HSPs)
chr2 (19-600)||(3826958-3827543)
chr2 (565-597)||(8430368-8430400)
[»] scaffold0087 (1 HSPs)
scaffold0087 (565-597)||(37818-37850)
[»] chr8 (2 HSPs)
chr8 (565-597)||(9631478-9631510)
chr8 (565-597)||(19256286-19256318)
[»] chr7 (1 HSPs)
chr7 (565-597)||(48933212-48933244)
[»] chr6 (3 HSPs)
chr6 (565-593)||(1954956-1954984)
chr6 (565-597)||(5360485-5360517)
chr6 (565-597)||(12351617-12351649)
[»] chr5 (2 HSPs)
chr5 (565-597)||(16121870-16121902)
chr5 (565-597)||(20187972-20188004)
[»] chr4 (2 HSPs)
chr4 (565-597)||(32175768-32175800)
chr4 (565-597)||(46286260-46286292)
[»] chr3 (2 HSPs)
chr3 (565-597)||(11007714-11007746)
chr3 (565-597)||(17582332-17582364)
[»] chr1 (3 HSPs)
chr1 (565-597)||(12720885-12720917)
chr1 (565-597)||(16913608-16913640)
chr1 (565-597)||(17661126-17661158)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 600
Target Start/End: Complemental strand, 3827543 - 3826958
Alignment:
Q  19 aataaagatcaattagaagtaacaatttatgatttacctggcagtgtattgaatggaaaacagaatcttcattgaccttataactagcattaacaatatc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3827543 aataaagatcaattagaagtaacaatttatgatttacctggcagtgtattgaatggaaaacagaatcttcattgaccttataactagcattaacaatatc 3827444  T
Q  119 aactccttcttcatgaagaactcgaagggtttcactgaacaaaaactgagactccaatccagttattagaacaacctctaagactaaaccaatttgttgt 218  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3827443 aactccttcttcatgaagaactcgaaaggtttcgctgaacaaaaactgagactccaatccagttattagaacaacctctaagactaaaccaatttgttgt 3827344  T
Q  219 atcttaatttttggagactttaatcccatcttctggtttctattcaaattcacattttgcctttgaattcctagtagaaaattcttcttttccttcattt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3827343 atcttaatttttggagactttaatcccatcttctggtttctattcaaattcacatttggcctttgaattcctagtagaaaattcttcttttccttcattt 3827244  T
Q  319 tctccaggttgatctgcaatttctttatgtagtttgttccttcctttagctgatccggcgctgaaatcgcctcctgcatcagataaattaaatcagtgac 418  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3827243 tctccaggttgatctgcaatttctttatgtagtttgttgcttcctttagctgatccggcactgaaatcgcctcctgcatcagataaattaaatcagtgac 3827144  T
Q  419 aaaatactaacattatgtcttgtcggtctctgttagtcat----agtgaattggttattaataaattttgccgttnnnnnnnnnnnnnnnntacaaacat 514  Q
    ||||||||||||||||||||||||||||||||||||||||    | |||||||||||||||||||||||||||||                |||||||||    
T  3827143 aaaatactaacattatgtcttgtcggtctctgttagtcatgtgcaatgaattggttattaataaattttgccgttaaaaaaaaataaaaaatacaaacat 3827044  T
Q  515 ccgtcgttttaaaaaatagtggcattcaaggagagaacatttctaatttcttgtgacgaattttattttttccgtcactaattcta 600  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3827043 ccgtcgttttaaaaaatagtgacattcaaggagagaacatttctaatttcttgtgacaaattttattttttccgtcactaattcta 3826958  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 8430368 - 8430400
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  8430368 ttgtgaggaattttattttttccgtcactaatt 8430400  T

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Target: scaffold0087 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 37850 - 37818
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  37850 ttgtgaggaattttattttttccgtcactaatt 37818  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 9631478 - 9631510
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  9631478 ttgtgaggaattttattttttccgtcactaatt 9631510  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 19256286 - 19256318
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  19256286 ttgtgaggaattttattttttccgtcactaatt 19256318  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 48933212 - 48933244
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  48933212 ttgtgaggaattttattttttccgtcactaatt 48933244  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 593
Target Start/End: Original strand, 1954956 - 1954984
Alignment:
Q  565 ttgtgacgaattttattttttccgtcact 593  Q
    |||||||||||||||||||||||||||||    
T  1954956 ttgtgacgaattttattttttccgtcact 1954984  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 5360485 - 5360517
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  5360485 ttgtgaggaattttattttttccgtcactaatt 5360517  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 12351649 - 12351617
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  12351649 ttgtgaggaattttattttttccgtcactaatt 12351617  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 16121902 - 16121870
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  16121902 ttgtgaggaattttattttttccgtcactaatt 16121870  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 20188004 - 20187972
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  20188004 ttgtgaggaattttattttttccgtcactaatt 20187972  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 32175800 - 32175768
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  32175800 ttgtgaggaattttattttttccgtcactaatt 32175768  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 46286292 - 46286260
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  46286292 ttgtgaggaattttattttttccgtcactaatt 46286260  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 11007746 - 11007714
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    ||||||||||||| |||||||||||||||||||    
T  11007746 ttgtgacgaatttcattttttccgtcactaatt 11007714  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 17582364 - 17582332
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  17582364 ttgtgaggaattttattttttccgtcactaatt 17582332  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 12720885 - 12720917
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  12720885 ttgtgaggaattttattttttccgtcactaatt 12720917  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Complemental strand, 16913640 - 16913608
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  16913640 ttgtgaggaattttattttttccgtcactaatt 16913608  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 597
Target Start/End: Original strand, 17661126 - 17661158
Alignment:
Q  565 ttgtgacgaattttattttttccgtcactaatt 597  Q
    |||||| ||||||||||||||||||||||||||    
T  17661126 ttgtgaggaattttattttttccgtcactaatt 17661158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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