View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3016_low_3 (Length: 607)
Name: NF3016_low_3
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3016_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 14 - 598
Target Start/End: Original strand, 19395820 - 19396404
Alignment:
| Q |
14 |
catcaggagcaccatcaggagcatcagcaagatcctcatcgtcgtccgcaacagcatcagcatcagcatcgggagtgggagcatgtgcatctgttttacc |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
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| T |
19395820 |
catcgggagcaccatcaggagcatcagcaagatcctcatcgtcgtccgcaacagcatcagtatcagcatcgggagcgggagcatgtgcatctgatttacc |
19395919 |
T |
|
| Q |
114 |
ccaaggtaatttgaatcctgaaagtccaccttgaaatgcattaacaatttgagaaacctgtgaaacaacagcgagggagttgctcagaagttgccttgat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19395920 |
ccaaggtaatttgaatcctgaaagtccaccttgaaatgcattaacaatttgagaaacctgtgaaacaacagcgagggagttgctcagaagttgccttgat |
19396019 |
T |
|
| Q |
214 |
tcagcaaatatcatctccatctttttcttcaattctccttccgggaaaccgtcagaacaagtgtcttggtaagatataacagcactaagccaattgttca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
19396020 |
tcagcaaatatcatctccatctttttcttcaattctccttccgggaaaccgtcagaacaagtgtcctggtaagatataacagcactaagccagttgttca |
19396119 |
T |
|
| Q |
314 |
actcagcttcttttgaagctagtttgctaatatcaagttgcccgacttcagtgatcgagaatcccatttcttctttagcatcctcaaacaactgtttaca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19396120 |
actcagcttcttttgaagctagtttgctaatatcaagttgcccgacttcagtgatcgagaatcccatttcttctttagcatcctcaaacaactgtttaca |
19396219 |
T |
|
| Q |
414 |
atcttcataagctcccttttcttccttggaagcgaatttcaagttcgcggttttgttgaatgcgttgttaatttcattcttggcaactagcatgaaaacc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19396220 |
atcttcataagctcccttttcttccttggaagcgaatttcaagttcgcggttttgttgaatgcgttgttaatttcattcttggcaactagcatgaaaacc |
19396319 |
T |
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| Q |
514 |
attagaagaccctttggttctttcaatttagggtcttttttcaatgcctctttaagtgtggttacacatttttccttgtattctg |
598 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19396320 |
attagaagaccctttggttctttcaatttagggtcttttttcaatgcctctttaagtgtggttacacatttttccttgtattctg |
19396404 |
T |
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