View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3016_low_6 (Length: 445)

Name: NF3016_low_6
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3016_low_6
NF3016_low_6
[»] chr7 (7 HSPs)
chr7 (3-142)||(8753786-8753924)
chr7 (3-72)||(19512022-19512090)
chr7 (271-338)||(6565522-6565589)
chr7 (289-332)||(25251525-25251568)
chr7 (300-338)||(35396659-35396697)
chr7 (268-332)||(5526719-5526783)
chr7 (293-333)||(14623487-14623527)
[»] chr6 (2 HSPs)
chr6 (3-131)||(1364676-1364804)
chr6 (290-332)||(11551661-11551703)
[»] chr3 (5 HSPs)
chr3 (267-335)||(19126677-19126745)
chr3 (268-320)||(38559911-38559963)
chr3 (269-335)||(37364429-37364495)
chr3 (288-333)||(43630420-43630465)
chr3 (300-332)||(29061008-29061040)
[»] chr5 (4 HSPs)
chr5 (50-141)||(42492338-42492429)
chr5 (289-324)||(16193122-16193157)
chr5 (267-335)||(10199012-10199080)
chr5 (267-335)||(32559297-32559365)
[»] chr4 (11 HSPs)
chr4 (289-332)||(30780144-30780187)
chr4 (289-335)||(30305993-30306038)
chr4 (274-332)||(46411820-46411878)
chr4 (3-133)||(2071143-2071272)
chr4 (267-313)||(16470297-16470343)
chr4 (267-313)||(53468593-53468639)
chr4 (293-338)||(34931417-34931462)
chr4 (275-335)||(9028072-9028132)
chr4 (268-332)||(9913893-9913957)
chr4 (288-332)||(12192494-12192538)
chr4 (53-141)||(46734559-46734647)
[»] chr8 (8 HSPs)
chr8 (289-335)||(1644673-1644719)
chr8 (267-332)||(40401586-40401651)
chr8 (296-334)||(4479764-4479802)
chr8 (290-332)||(16392587-16392629)
chr8 (289-335)||(28580959-28581005)
chr8 (292-335)||(1135393-1135437)
chr8 (267-323)||(32232389-32232445)
chr8 (288-332)||(41603075-41603119)
[»] chr2 (6 HSPs)
chr2 (267-321)||(14735907-14735961)
chr2 (289-335)||(31168643-31168689)
chr2 (267-320)||(3752790-3752843)
chr2 (298-335)||(25603911-25603948)
chr2 (292-332)||(31148644-31148684)
chr2 (289-325)||(32957553-32957589)
[»] chr1 (2 HSPs)
chr1 (289-321)||(25942666-25942698)
chr1 (268-332)||(48100716-48100780)
[»] scaffold0036 (1 HSPs)
scaffold0036 (267-334)||(18887-18954)
[»] scaffold0460 (1 HSPs)
scaffold0460 (267-321)||(1246-1300)
[»] scaffold0016 (1 HSPs)
scaffold0016 (267-332)||(204583-204648)


Alignment Details
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 8753924 - 8753786
Alignment:
Q  3 catagggtccgaccaccatctctgagaatcatacataaacacgacattttttagctttaagccaccaataagaacgagatttaactttgtccagaatctg 102  Q
    ||||||||||||||||||||||||| || | |||| ||||| | ||||||| |||||| ||||||||||| ||| || ||||||||| ||| | ||||||    
T  8753924 catagggtccgaccaccatctctgaaaaccgtacacaaacatggcattttt-agctttgagccaccaatacgaatgaaatttaacttcgtctaaaatctg 8753826  T
Q  103 aataattgaagtttgaatgttattaaagagcatgttattt 142  Q
    ||||||||  ||||| ||||||||||||||| ||||||||    
T  8753825 aataattggggtttggatgttattaaagagcttgttattt 8753786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 19512022 - 19512090
Alignment:
Q  3 catagggtccgaccaccatctctgagaatcatacataaacacgacattttttagctttaagccaccaata 72  Q
    |||||||||||||||||||||||||||| | |||| ||||| |||  || |||||||| |||||||||||    
T  19512022 catagggtccgaccaccatctctgagaaccgtacacaaacatgac-gttattagctttcagccaccaata 19512090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 6565522 - 6565589
Alignment:
Q  271 cttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaatccggc 338  Q
    ||||||||| || ||  ||||||||||||||||||||||||||  ||||| |||| ||||| ||||||    
T  6565522 cttgtgagcataactcaattggtatgaacaatgcataaaatatgcaaggtctggggttcaactccggc 6565589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 25251525 - 25251568
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  25251525 ttggtataaacaatgcataatatatataaggtttggggttcaaa 25251568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 35396659 - 35396697
Alignment:
Q  300 aatgcataaaatatataaggtttgggattcaaatccggc 338  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  35396659 aatgcataaaatatataacgtttggggttcaaatccggc 35396697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 5526719 - 5526783
Alignment:
Q  268 gtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||| |||||| |||||   |||||||| ||||||||||| ||||||||| |||||| ||||||    
T  5526719 gtcctcgtgagcttagctcagttggtatggacaatgcataatatatataagatttggggttcaaa 5526783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 14623527 - 14623487
Alignment:
Q  293 tatgaacaatgcataaaatatataaggtttgggattcaaat 333  Q
    |||| |||||||||||||||| ||||||||||| |||||||    
T  14623527 tatggacaatgcataaaatatgtaaggtttggggttcaaat 14623487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 1364676 - 1364804
Alignment:
Q  3 catagggtccgaccaccatctctgagaatcatacataaacacgacattttttagctttaagccaccaataagaacgagatttaactttgtccagaatctg 102  Q
    |||| ||| |||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||| ||| || ||||||||||||| ||||| ||    
T  1364676 cataaggttcgaccaccatctgtgagaatcatacagaaacatgacatttt-tagctttaagccaccaatacgaatgaaatttaactttgtctagaatatg 1364774  T
Q  103 aataattga-agtttgaatgttattaaaga 131  Q
    |||||| ||  ||||| |||||||||||||    
T  1364775 aataatagagggtttggatgttattaaaga 1364804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 11551703 - 11551661
Alignment:
Q  290 tggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||||| ||||||||||||||||||||| || ||||||||||    
T  11551703 tggtatggacaatgcataaaatatataagattcgggattcaaa 11551661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 335
Target Start/End: Complemental strand, 19126745 - 19126677
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    ||||||||||||||||| |   |||||||| |||||||||||||||| ||||||||||| |||||||||    
T  19126745 tgtccttgtgagcgtagttcagttggtatggacaatgcataaaatatgtaaggtttggggttcaaatcc 19126677  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 38559963 - 38559911
Alignment:
Q  268 gtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggt 320  Q
    ||||||||||||||| ||   |||||||||||||||||||| |||||||||||    
T  38559963 gtccttgtgagcgtaactcagttggtatgaacaatgcataatatatataaggt 38559911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 37364495 - 37364429
Alignment:
Q  269 tccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    |||| |||||| |||||| ||||||||| ||||||||||||||||| ||| | |||  |||||||||    
T  37364495 tcctcgtgagcatagcttaattggtatggacaatgcataaaatatacaagatctggagttcaaatcc 37364429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 43630465 - 43630420
Alignment:
Q  288 attggtatgaacaatgcataaaatatataaggtttgggattcaaat 333  Q
    ||||||||||||||||||||| |||| ||||||||| | |||||||    
T  43630465 attggtatgaacaatgcataatatatgtaaggtttgaggttcaaat 43630420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 332
Target Start/End: Original strand, 29061008 - 29061040
Alignment:
Q  300 aatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||||||| |||||||||||||||||||||||    
T  29061008 aatgcataacatatataaggtttgggattcaaa 29061040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 42492338 - 42492429
Alignment:
Q  50 tttttagctttaagccaccaataagaacgagatttaactttgtccagaatctgaataattgaagtttgaatgttattaaagagcatgttatt 141  Q
    |||||| |||||||||||||||| ||| || ||||||||||||| |||||||||   ||||  ||||| | ||||||||||||| |||||||    
T  42492338 tttttatctttaagccaccaatatgaatgaaatttaactttgtctagaatctgagccattggggtttggacgttattaaagagcttgttatt 42492429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 324
Target Start/End: Original strand, 16193122 - 16193157
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtttgg 324  Q
    ||||||||||||||||||||||||| ||||||||||    
T  16193122 ttggtatgaacaatgcataaaatatgtaaggtttgg 16193157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 10199012 - 10199080
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    |||||| |||||| |||||   |||||||| ||||||||||| ||||||||||| |||| ||| |||||    
T  10199012 tgtcctcgtgagcttagctcagttggtatggacaatgcataatatatataaggtgtggggttcgaatcc 10199080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 32559297 - 32559365
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    |||||| |||||| |||||  |||| |||  |||||||||||||||| |||||| |||| |||||||||    
T  32559297 tgtcctcgtgagcttagctcaattgatattgacaatgcataaaatatgtaaggtctggggttcaaatcc 32559365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 30780144 - 30780187
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    |||||||| |||||||||||||||||||||||| ||||||||||    
T  30780144 ttggtatggacaatgcataaaatatataaggttcgggattcaaa 30780187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 30305993 - 30306038
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  30305993 ttggtatgaacaatgcataaaatatataaagtttggg-ttcaaatcc 30306038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 46411878 - 46411820
Alignment:
Q  274 gtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    |||||| || ||| |||||||||||||||| |||| |||||||||||||| ||||||||    
T  46411878 gtgagcttaacttaattggtatgaacaatgtataacatatataaggtttgagattcaaa 46411820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 2071143 - 2071272
Alignment:
Q  3 catagggtccgaccaccatctctgagaatcatacataaacacgacattttttagctttaagccaccaataagaacgagatttaactttgtccagaatctg 102  Q
    |||| ||||| ||||| |||| |||||||| |||| ||||  |||||| || || ||| |||||| |||| ||| || |||| |||||||| |  | |||    
T  2071143 catacggtccaaccactatctatgagaatcgtacacaaacgtgacattatt-agttttgagccactaatacgaatgaaatttcactttgtctaagagctg 2071241  T
Q  103 aataattgaagtttgaatgttattaaagagc 133  Q
    |||| ||| |||||| |||||||||||||||    
T  2071242 aatagttggagtttggatgttattaaagagc 2071272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 313
Target Start/End: Original strand, 16470297 - 16470343
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatat 313  Q
    |||||| ||||||||||||  ||||||||| ||||||||||||||||    
T  16470297 tgtcctcgtgagcgtagctcaattggtatggacaatgcataaaatat 16470343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 53468639 - 53468593
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatat 313  Q
    |||||| |||||| |||||  ||||||||||||||||||||||||||    
T  53468639 tgtcctcgtgagcatagctcaattggtatgaacaatgcataaaatat 53468593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 34931462 - 34931417
Alignment:
Q  293 tatgaacaatgcataaaatatataaggtttgggattcaaatccggc 338  Q
    |||||||||||||||  ||||||||||||| |||||| ||||||||    
T  34931462 tatgaacaatgcatactatatataaggtttaggattcgaatccggc 34931417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 9028132 - 9028072
Alignment:
Q  275 tgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    ||||| |||||| ||||||| | |||||||||||||||| |||||| |||| ||| |||||    
T  9028132 tgagcttagcttaattggtagggacaatgcataaaatatgtaaggtctggggttcgaatcc 9028072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 9913893 - 9913957
Alignment:
Q  268 gtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||| |||||| |||||   |||||||||||||||||||||||||| ||| || || |||||||    
T  9913893 gtcctcgtgagcttagctcagttggtatgaacaatgcataaaatatacaagattcggaattcaaa 9913957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 12192538 - 12192494
Alignment:
Q  288 attggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||||||||||||||||||| ||||  |||||||| ||||||||    
T  12192538 attggtatgaacaatgcataatatatgcaaggtttgagattcaaa 12192494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 46734647 - 46734559
Alignment:
Q  53 ttagctttaagccaccaataagaacgagatttaactttgtccagaatctgaataattgaagtttgaatgttattaaagagcatgttatt 141  Q
    |||||||| |||||||||||||||  | |||||| |||||| | || ||  || || | ||||||||||||||||| ||| ||||||||    
T  46734647 ttagctttcagccaccaataagaattatatttaaatttgtctataagctctatgatgggagtttgaatgttattaatgagtatgttatt 46734559  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 1644719 - 1644673
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||||    
T  1644719 ttggtatgagcaatgcataaaatatgtaaggtctgggattcaaatcc 1644673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 40401586 - 40401651
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    |||||| ||||||||||||  ||||||||| |||||||||||||||| ||| || || ||||||||    
T  40401586 tgtcctcgtgagcgtagctcaattggtatggacaatgcataaaatatgtaaagtctgagattcaaa 40401651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 4479764 - 4479802
Alignment:
Q  296 gaacaatgcataaaatatataaggtttgggattcaaatc 334  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  4479764 gaacaatgcataaaatatataaagtttggggttcaaatc 4479802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 16392587 - 16392629
Alignment:
Q  290 tggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||    
T  16392587 tggtatgaaaaatgcataaaatatacaaggtttggggttcaaa 16392629  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 28580959 - 28581005
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    |||||||||| |||||||||||||| ||||||| ||| |||||||||    
T  28580959 ttggtatgaataatgcataaaatatgtaaggttcggggttcaaatcc 28581005  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 1135437 - 1135393
Alignment:
Q  292 gtatgaacaatgcataa-aatatataaggtttgggattcaaatcc 335  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||    
T  1135437 gtatgaacaatgcataataatatgtaaggtttggggttcaaatcc 1135393  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 32232445 - 32232389
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttg 323  Q
    |||||| |||||| ||| || |||| |||||||||||||||| ||||||||| ||||    
T  32232445 tgtcctcgtgagcttaggttaattgatatgaacaatgcataatatatataagatttg 32232389  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 41603075 - 41603119
Alignment:
Q  288 attggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||||||||||||||||||| |||| |||||| |||| ||||||    
T  41603075 attggtatgaacaatgcataatatatgtaaggtctggggttcaaa 41603119  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 321
Target Start/End: Complemental strand, 14735961 - 14735907
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtt 321  Q
    |||||| |||||| |||||| ||||||||| |||||||||||||||| |||||||    
T  14735961 tgtcctcgtgagcttagcttaattggtatggacaatgcataaaatatgtaaggtt 14735907  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 31168643 - 31168689
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    |||||||||||||||||||||||||  || ||||||||| |||||||    
T  31168643 ttggtatgaacaatgcataaaatatgcaaagtttgggatacaaatcc 31168689  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 3752843 - 3752790
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggt 320  Q
    |||||| |||||| ||||| | ||| |||||||||||||||||||||| |||||    
T  3752843 tgtcctcgtgagcttagctcggttgttatgaacaatgcataaaatatacaaggt 3752790  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 25603948 - 25603911
Alignment:
Q  298 acaatgcataaaatatataaggtttgggattcaaatcc 335  Q
    ||||||||||| |||||||||||||||| |||||||||    
T  25603948 acaatgcataatatatataaggtttggggttcaaatcc 25603911  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 31148644 - 31148684
Alignment:
Q  292 gtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    ||||| ||||||||||| |||||||||||| ||||||||||    
T  31148644 gtatggacaatgcataatatatataaggttcgggattcaaa 31148684  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 32957589 - 32957553
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtttggg 325  Q
    |||||||||||||||||||| |||| |||||||||||    
T  32957589 ttggtatgaacaatgcataatatatgtaaggtttggg 32957553  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 321
Target Start/End: Complemental strand, 25942698 - 25942666
Alignment:
Q  289 ttggtatgaacaatgcataaaatatataaggtt 321  Q
    |||||||||||||||||||||||||||||||||    
T  25942698 ttggtatgaacaatgcataaaatatataaggtt 25942666  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 48100716 - 48100780
Alignment:
Q  268 gtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    |||||||||||| |||||   |||||||| ||||||||||||||||  |||||||||| ||||||    
T  48100716 gtccttgtgagcttagctcagttggtatggacaatgcataaaatatgcaaggtttggggttcaaa 48100780  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 334
Target Start/End: Original strand, 18887 - 18954
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaatc 334  Q
    ||||||||||||| |||||  ||||||||| ||||||||||||||| | |||||| ||| ||| ||||    
T  18887 tgtccttgtgagcatagctcaattggtatggacaatgcataaaataaacaaggttaggggttcgaatc 18954  T

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Target: scaffold0460 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 321
Target Start/End: Original strand, 1246 - 1300
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtt 321  Q
    |||||| |||||| ||||||  ||||| |||||||||||||||||||| ||||||    
T  1246 tgtcctcgtgagcttagcttagttggtttgaacaatgcataaaatatacaaggtt 1300  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 204583 - 204648
Alignment:
Q  267 tgtccttgtgagcgtagcttgattggtatgaacaatgcataaaatatataaggtttgggattcaaa 332  Q
    |||||| |||||| |||||   |||| |||||||||||||||||||| ||||||| ||| ||||||    
T  204583 tgtcctcgtgagcatagctcagttggcatgaacaatgcataaaatatgtaaggttcggggttcaaa 204648  T

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