View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3016_low_7 (Length: 393)
Name: NF3016_low_7
Description: NF3016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3016_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 20 - 381
Target Start/End: Complemental strand, 47456906 - 47456545
Alignment:
| Q |
20 |
agatcatcagagcttagaagctatataagaaataaacattcatattaaaaagatgttattctgattgaacatatacacacaccttgatatttctaaacag |
119 |
Q |
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| T |
47456906 |
agatcatcagagcttagaagctatataagaaataaacattcatattaaaaagatgttattctgattgaacatatacacacaccttgatatttctaaacag |
47456807 |
T |
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| Q |
120 |
aaactaattattaatcgtctatatttcgcgactcatatattaccttgatttggagctgcagaaatttcacatattggattgcatcttcaagcattgtgct |
219 |
Q |
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| T |
47456806 |
aaactaattattaatcgtctatatttcgcgactcatatattaccttgatttggagctgcagaaatttcacatattggattgcatcttcaagcattgtgct |
47456707 |
T |
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| Q |
220 |
tatatcaacctgtatgaccatcccatatatgaaattatacatctctcaaatagttacaagcccctttaaactgaaaaacattcatgcaaaaataagttac |
319 |
Q |
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| T |
47456706 |
tatatcaacctgtatgaccatcccatatgtgaaattatacatctctcaaatagttacaagcccctttaaactgaaaaacattcatgcaaaaataagttac |
47456607 |
T |
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| Q |
320 |
ctttgttccatttggtacaagattctgcagagttctcagtctctcgtttatcttctcccttc |
381 |
Q |
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| T |
47456606 |
ctttgttccatttggtacaagattctgcagagttctcagtctctcgtttatcttctcccttc |
47456545 |
T |
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