View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3017_high_13 (Length: 262)
Name: NF3017_high_13
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 38385444 - 38385689
Alignment:
| Q |
1 |
catgccgtcaaagtcgttaagagagaattgaagggtggaaatttcctctcgacaccttccggtaaaaattatcacacgaa-gaagatcagttcccagcca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38385444 |
catgccgtcaaagtcgttaagagagaattgaagggtggaaatttcctctggacaccttccggtaaaaattatcacacgaaagaagatcagttcccagcca |
38385543 |
T |
|
| Q |
100 |
acacatgttttctatatttacaaaccattttttgagtttcttgcaacacaaggaatcacaaataagaagcaatatgcaaaatttacctatgagcattccc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38385544 |
acacatgttttctatatttacaaaccattttttgagtttcttgcaacacaaggaatcacaaataagaagcaatatgcaaaatttacctatgagcattccc |
38385643 |
T |
|
| Q |
200 |
accatgttgataacagcatgagcaaaagaactatcagcattagaat |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38385644 |
accatgttgataacagcatgagcaaaagaactatcagcattagaat |
38385689 |
T |
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