View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3017_high_7 (Length: 365)
Name: NF3017_high_7
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 353
Target Start/End: Original strand, 53095991 - 53096337
Alignment:
| Q |
7 |
gttacctccagccgacaaggacaaggacaagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagagggaacaaggggggacat |
106 |
Q |
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| T |
53095991 |
gttacctccagccgacaaggacaaggacaagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagagggaacaaggggggacat |
53096090 |
T |
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| Q |
107 |
cattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcggaggatccttagagagagatatgtcaagataatggcactgc |
206 |
Q |
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| T |
53096091 |
cattaccaaaagcattcataagcttacttgctttagaggatcacattttgcaggcatcggaggatccttagagagagatatgtcaagataatggcactgc |
53096190 |
T |
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| Q |
207 |
tgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccatttgagt |
306 |
Q |
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| T |
53096191 |
tgctgaagaataccatttttagtttcaggaaaaatgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctcgtcccatttgagt |
53096290 |
T |
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| Q |
307 |
tttgtgctttgattagaactccacactttgatccttggtgtactctg |
353 |
Q |
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| T |
53096291 |
tttgtgctttgattagaactccacactttgatccttggtgtactctg |
53096337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 240 - 322
Target Start/End: Complemental strand, 1369483 - 1369401
Alignment:
| Q |
240 |
atgtccaaactagcagaatgaactgttccaacatcaaaactatttccatttctagtcccatttgagttttgtgctttgattag |
322 |
Q |
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| T |
1369483 |
atgtccaaactagtagtatgaactgttccagcatcaaaactatttccatttctcatcccattagagttttgtgctttgattag |
1369401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 97
Target Start/End: Original strand, 26143302 - 26143364
Alignment:
| Q |
35 |
aagaagttgaaattctacagaatatgaaatataatcatcagatcatgaggaagagggaacaag |
97 |
Q |
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| T |
26143302 |
aagaagttgaagctttgcagaatatgaaatataatcatcagagcatgaggaagaggtaacaag |
26143364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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