View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3017_low_1 (Length: 529)
Name: NF3017_low_1
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 20 - 516
Target Start/End: Original strand, 49653317 - 49653816
Alignment:
| Q |
20 |
tggtacccatcttggcttgtttcctttgttttcttggcattttcctcatctcactttcattttgatttcaagtttccaattccctctcactctcccaacc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653317 |
tggtacccatcttggcttgtttcctttgttttcttggcattttcctcttctcactttcattttgatttcaagtttccaattccctctcactctcccaacc |
49653416 |
T |
|
| Q |
120 |
acttctctctaatggatgctacctcacaacctttgaagtatcaggtaacatgttacttcaacccaacaatcacaccctattgtcaaaatctttctttgtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653417 |
acttctctctaatggatgctacctcacaacctttgaagtatcaggtaacatgttacttcaacccaacaatcacaccctattgtcaaaatctttctttgtt |
49653516 |
T |
|
| Q |
220 |
ttttattttgtaagctaaagttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttctt |
319 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653517 |
ttttattttgtaagctaaacttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttctt |
49653616 |
T |
|
| Q |
320 |
cagagcattgatggtactgagcttataaatcaaactaacttaagttttcaactattcagttctttttcatttcatgcatggaaagattacaagtcttaaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653617 |
cagagcattgatggtactgagcttataaatcaaactaacttaagttttcaactattcagttctttttcatttcatgcatggaaagattacaagtcttaaa |
49653716 |
T |
|
| Q |
420 |
---tcttactttgctaaacccaaaatcactgtcatttccatttacccttttcttaccactaaaacactgtatggtttggtggctggtgctctaataagta |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653717 |
tcttcttactttgctaaacccaaaatcactgtcatttccatttacccttttcttaccactaaaacactgtatggtttggtggctggtgctctaataagta |
49653816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 337
Target Start/End: Complemental strand, 14382151 - 14382068
Alignment:
| Q |
254 |
cagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtact |
337 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||| | || |||||||||||||| |
|
|
| T |
14382151 |
cagacatggttcttgaaagtttctatccactgtgaaggttgcagaaagaaagtaaagaaagttttaaagcgcattgatggtact |
14382068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University