View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3017_low_13 (Length: 297)
Name: NF3017_low_13
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 289
Target Start/End: Original strand, 30811607 - 30811893
Alignment:
| Q |
16 |
agagaaatatagataaaaacactcataacacgacctattcctattgccctctcatgacgactacaac------------tccaactcaaccgcacgtgca |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
30811607 |
agagaaatatagataaaaacactcataacacgacctattcctattgccctctcatgacgactacaactccaactccaactccaactcaaccgcacgagca |
30811706 |
T |
|
| Q |
104 |
tcactatcaccatcactccctatctttctttctatttcttcctcgtcatagcattgggtatgttgtatctcctcatcctacttatccactcgcttataac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
30811707 |
tcactatcaccatcactccctatctttctttctatttcttcctcgtcatagcattgggtatgttgtatctcctcatccgacttatccactcacttataac |
30811806 |
T |
|
| Q |
204 |
ttgccttcaaa-aatggtgatacgacgcaaaaatatgaatatcatgcatcaccagcctaatgaccaactgcaaacacatgtcattca |
289 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
30811807 |
ttgtcttcaaacaatggtgatacgacgcaaaaatatgaatatcatgcatcaccagcctaacgaccaactgcaaacacatgtcgttca |
30811893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 35374424 - 35374494
Alignment:
| Q |
49 |
cctattcctattgccctctcatgacgactacaactccaactcaaccgcacgtgcatcactatcaccatcac |
119 |
Q |
| |
|
||||||| | || ||||| |||||| || ||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
35374424 |
cctattcttcttcccctcccatgacaaccacagctccaactcagccgcacatgcatcactatcaccatcac |
35374494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University