View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3017_low_17 (Length: 248)
Name: NF3017_low_17
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 90 - 233
Target Start/End: Complemental strand, 3746136 - 3745993
Alignment:
| Q |
90 |
tcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagat |
189 |
Q |
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| T |
3746136 |
tcaccatcatttgaaaaagaagaaacttatgattttgttcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagat |
3746037 |
T |
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| Q |
190 |
tcttttggcatgacatcatgagtggaaaaaaccctacttcaatt |
233 |
Q |
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| T |
3746036 |
tcttttggcatgacatcatgagtggaaaaaaccctacttcaatt |
3745993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 233
Target Start/End: Complemental strand, 3751948 - 3751810
Alignment:
| Q |
95 |
atcatttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttt |
194 |
Q |
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| T |
3751948 |
atcattagaaaaacaagaaacttttgattttgttcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctat |
3751849 |
T |
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| Q |
195 |
tggcatgacatcatgagtggaaaaaaccctacttcaatt |
233 |
Q |
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| T |
3751848 |
tggcatgatatcttgagtgggaaaaatcccactgcaatt |
3751810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 3781314 - 3781187
Alignment:
| Q |
102 |
gaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatg |
201 |
Q |
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| T |
3781314 |
gaaaaacaagacactttcgattttgttcgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggcatg |
3781215 |
T |
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| Q |
202 |
acatcatgagtggaaaaaaccctacttc |
229 |
Q |
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| T |
3781214 |
acgtcttgagtggaaaaaatccaacttc |
3781187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 3767313 - 3767203
Alignment:
| Q |
119 |
tgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaa |
218 |
Q |
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| T |
3767313 |
tgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaa |
3767214 |
T |
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| Q |
219 |
aaccctacttc |
229 |
Q |
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| T |
3767213 |
aaccctacttc |
3767203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 3762926 - 3762802
Alignment:
| Q |
102 |
gaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttggcatg |
201 |
Q |
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||||| |||||||||| ||||||||||||| ||||||||| || |||||| ||||||||| || ||||| ||||| ||||| ||||||| ||||||| |
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| T |
3762926 |
gaaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatg |
3762827 |
T |
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| Q |
202 |
acatcatgagtggaaaaaaccctac |
226 |
Q |
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|||| | |||||||| |||||||| |
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| T |
3762826 |
acatactaagtggaaataaccctac |
3762802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 3777006 - 3776874
Alignment:
| Q |
97 |
catttgaaaaagaagaaacttatgattttgttcgttcaatagacccaaaattgttacacctaaacaacaaagaaaagctaagtcatttcagattcttttg |
196 |
Q |
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|||| ||||||||||| || | ||||||||||||| ||||||| | || |||||| ||||||||| || ||||||||||||||||||| ||| | ||| |
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| T |
3777006 |
cattagaaaaagaagatacctttgattttgttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattg |
3776907 |
T |
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| Q |
197 |
gcatgacatcatgagtggaaaaaaccctacttc |
229 |
Q |
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| T |
3776906 |
gcatgacatagttagtggaaaaaatccaacttc |
3776874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 3755742 - 3755680
Alignment:
| Q |
168 |
gaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctacttca |
230 |
Q |
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||||| ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |
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| T |
3755742 |
gaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccctacttca |
3755680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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