View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3017_low_18 (Length: 239)
Name: NF3017_low_18
Description: NF3017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3017_low_18 |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7500087 - 7500309
Alignment:
| Q |
1 |
aaggcgcgccgcttcgtactcgttggctctacgacagaactacttataggagaatggttgaacctttagatattgctcaatactatctcaaatggtggta |
100 |
Q |
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| T |
7500087 |
aaggcgcaccgcttcgtactcgttggctctacgacagaactacttataggagaatggttgaaccttaagatattgctcaatactatctcaaatggtggta |
7500186 |
T |
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| Q |
101 |
aagactatgtgactagagcaagatcaagacactacgaacaattggaggattggttgtgaaggaagcaacaactacagccacaaacaaagtaactagagat |
200 |
Q |
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| T |
7500187 |
aagactatgtgactagagcaagatcaagacactacgaacaattggaggattggttgtgaaggaagcaacaactacagccacaaacaaagtaactagagat |
7500286 |
T |
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| Q |
201 |
aaagaacttactcactttgaatg |
223 |
Q |
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| T |
7500287 |
aaagaacttactcactttgaatg |
7500309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 2153292 - 2153432
Alignment:
| Q |
12 |
cttcgtactcgttggctctacgacagaactacttataggagaatggttgaacctttagatattgctcaatactatctcaaatggtggtaaagactatgtg |
111 |
Q |
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| T |
2153292 |
cttcgtacacgctggctctatggcggaacaacttacaggagaatggttgaaccattagaaatagctcaattctatctcaa-tggtggtaaagactatgtg |
2153390 |
T |
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| Q |
112 |
actagagcaagatcaagacactacgaacaattggaggattgg |
153 |
Q |
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| T |
2153391 |
acaacagaaagatctagtcactacaaacaattggaggattgg |
2153432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 2168554 - 2168603
Alignment:
| Q |
37 |
gaactacttataggagaatggttgaacctttagatattgctcaatactat |
86 |
Q |
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| T |
2168554 |
gaactacatatagaagaatggttgaaccactagctattgctcaatactat |
2168603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 2180187 - 2180236
Alignment:
| Q |
37 |
gaactacttataggagaatggttgaacctttagatattgctcaatactat |
86 |
Q |
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| T |
2180187 |
gaactacatatagaagaatggttgaaccactagctattgctcaatactat |
2180236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 2207430 - 2207471
Alignment:
| Q |
44 |
ttataggagaatggttgaacctttagatattgctcaatacta |
85 |
Q |
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| T |
2207430 |
ttatagaagaatggttgaaccattagctattgctcaatacta |
2207471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 2167 - 2094
Alignment:
| Q |
13 |
ttcgtactcgttggctctacgacagaactacttataggagaatggttgaacctttagatattgctcaatactat |
86 |
Q |
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| T |
2167 |
ttcgtactcgctggctcttcggtggaactacatatagaagaatggttgaaccactagctattgctcaatactat |
2094 |
T |
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